EnhancerDB
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  3. rs5820325[chr17:38260964]
Enhancers that have rs5820325[chr17:38260964]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38259185 38273195 enh4407
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs5820325[chr17:38260964]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38260828 38261346 TCF7L2 GTRD no Colon (HCT116) 21753201
chr17 38260959 38260969 BHLHE40 JASPAR yes 54193050
chr17 38260959 38260969 CLOCK JASPAR yes 54193051
chr17 38260959 38260969 HEY1 JASPAR yes 54193052
chr17 38260959 38260969 MAX JASPAR yes 54193053
chr17 38260959 38260969 MNT JASPAR yes 54193054
chr17 38260961 38260966 MYC TRANSFAC yes 54193055
chr17 38260961 38260966 USF1 TRANSFAC yes 54193056
chr17 38260961 38260966 USF2 TRANSFAC yes 54193057
chr17 38260963 38260983 RREB1 JASPAR yes 54193058
Genes associated with rs5820325[chr17:38260964], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More