EnhancerDB
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  3. rs58828718[chr1:200253673]
Enhancers that have rs58828718[chr1:200253673]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200249825 200279179 enh867
Prostate (PC-3) Liver (HepG2) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs58828718[chr1:200253673]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200253369 200253713 ZNF143 GTRD no Epithelial (MCF-7) 21362705
chr1 200253457 200254359 ZNF143 GTRD no Epithelial (MCF-7) 21362706
chr1 200253459 200255000 ZNF274 GTRD no Blood (GM12878) 21362707
chr1 200253582 200254861 ZNF274 GTRD no Blood (GM12878) 21362708
chr1 200253596 200255018 ZNF274 GTRD no Blood (GM12878) 21362709
chr1 200253597 200254371 ZNF143 GTRD no Epithelial (MCF-7) 21362710
chr1 200253599 200255148 ZNF274 GTRD no Blood (GM12878) 21362711
chr1 200253645 200254942 ZNF274 GTRD no Blood (GM12878) 21362712
chr1 200253657 200255003 ZNF274 GTRD no Blood (GM12878) 21362713
chr1 200253662 200253681 PAX5 JASPAR yes 34428614
chr1 200253663 200253682 CTCF JASPAR yes 34428615
Genes associated with rs58828718[chr1:200253673], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More