EnhancerDB
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  3. rs6439180[chr3:129100015]
Enhancers that have rs6439180[chr3:129100015]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 129095885 129119955 enh7528
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-SH) Astrocyte Bone (Osteoblast) Colon (HCT116) Thyroid Pancreas (Panc1) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs6439180[chr3:129100015]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 129099994 129100015 REST JASPAR yes 5656206
chr3 129100004 129100022 NFYA JASPAR yes 5656210
chr3 129100007 129100023 NFYA JASPAR yes 5656211
chr3 129100009 129100019 EN2 JASPAR yes 5656212
chr3 129100010 129100025 NFYB JASPAR yes 5656213
chr3 129100012 129100017 NFY TRANSFAC yes 5656214
Genes associated with rs6439180[chr3:129100015], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr3 128968449 128996614 + COPG1 ENSG00000181789.10 128968449 103401 Uterus 0.339261 4066