EnhancerDB
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  3. rs6489002[chr12:122929822]
Enhancers that have rs6489002[chr12:122929822]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122929045 122955735 enh15070
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Blood (OCI-LY7) Placenta Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Thymus Epithelial (MCF-7)
Transcript factors that have rs6489002[chr12:122929822]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122928591 122930513 TCF7L2 GTRD no Colon (HCT116) 21579771
chr12 122929523 122930235 TCF7L2 GTRD no Colon (HCT116) 21579776
chr12 122929576 122930200 TCF7L2 GTRD no Colon (HCT116) 21579777
chr12 122929636 122930396 ZNF143 GTRD no Epithelial (MCF-7) 21579778
chr12 122929651 122930355 TCF7L2 GTRD no Colon (HCT116) 21579779
chr12 122929689 122930367 TCF7L2 GTRD no Colon (HCT116) 21579780
chr12 122929781 122930423 MYOD GTRD no Muscle (Myoblast) 21579781
chr12 122929809 122929823 RORA JASPAR yes 124279465
chr12 122929815 122929823 HOXA5 JASPAR yes 124279467
chr12 122929816 122929826 EVX1 JASPAR yes 124279468
chr12 122929816 122929826 EVX2 JASPAR yes 124279469
chr12 122929816 122929826 HOXB2 JASPAR yes 124279470
chr12 122929816 122929826 MEOX1 JASPAR yes 124279471
chr12 122929816 122929826 MEOX2 JASPAR yes 124279472
chr12 122929822 122929827 GATA2 JASPAR yes 124279473
Genes associated with rs6489002[chr12:122929822], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More