EnhancerDB
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  3. rs6656620[chr1:43473253]
Enhancers that have rs6656620[chr1:43473253]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 43453005 43490361 enh11805
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Lung (PC-9) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 43473183 43473398 vista1395
VISTA
Transcript factors that have rs6656620[chr1:43473253]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 43471812 43473352 ZBTB33 GTRD no Brain (SK-N-SH) 107803014
chr1 43473242 43473253 NFKB1 JASPAR yes 28477305
chr1 43473242 43473253 NFKB1 JASPAR yes 118282357
chr1 43473243 43473253 NFKB1 JASPAR yes 28477307
chr1 43473243 43473253 NFKB1 JASPAR yes 118282359
chr1 43473248 43473257 SP1 TRANSFAC yes 28477308
chr1 43473248 43473257 SP1 TRANSFAC yes 118282360
chr1 43473249 43473255 SP1 TRANSFAC yes 28477309
chr1 43473249 43473255 SP1 TRANSFAC yes 118282361
chr1 43473249 43473259 SP1 JASPAR yes 28477310
chr1 43473249 43473259 SP1 JASPAR yes 118282362
chr1 43473250 43473257 SP1 TRANSFAC yes 28477311
chr1 43473250 43473257 SP1 TRANSFAC yes 118282363
chr1 43473251 43473256 SP1 TRANSFAC yes 28477312
chr1 43473251 43473256 SP1 TRANSFAC yes 118282364
chr1 43473251 43473257 SP1 TRANSFAC yes 28477313
chr1 43473251 43473257 SP1 TRANSFAC yes 118282365
Genes associated with rs6656620[chr1:43473253], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More