EnhancerDB
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  3. rs6684623[chr1:42129206]
Enhancers that have rs6684623[chr1:42129206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs6684623[chr1:42129206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42129193 42129206 TFAP2B JASPAR yes 28406944
chr1 42129200 42129206 SP1 TRANSFAC yes 28406945
chr1 42129201 42129206 SP1 TRANSFAC yes 28406946
chr1 42129203 42129213 GSC2 JASPAR yes 28406947
chr1 42129203 42129213 GSC JASPAR yes 28406948
chr1 42129204 42129212 OTX1 JASPAR yes 28406949
chr1 42129204 42129212 OTX2 JASPAR yes 28406950
Genes associated with rs6684623[chr1:42129206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More