EnhancerDB
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  3. rs6700520[chr1:25343544]
Enhancers that have rs6700520[chr1:25343544]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25342085 25355155 enh148
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Thymus Stomach
Transcript factors that have rs6700520[chr1:25343544]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25343539 25343549 TBX21 JASPAR yes 27553931
chr1 25343539 25343550 TBX20 JASPAR yes 27553932
chr1 25343539 25343550 TBX2 JASPAR yes 27553933
chr1 25343539 25343552 EOMES JASPAR yes 27553934
chr1 25343540 25343548 TBX15 JASPAR yes 27553935
chr1 25343540 25343548 TBX1 JASPAR yes 27553936
chr1 25343540 25343548 TBX4 JASPAR yes 27553937
chr1 25343540 25343548 TBX5 JASPAR yes 27553938
chr1 25343540 25343550 TBR1 JASPAR yes 27553939
Genes associated with rs6700520[chr1:25343544], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More