EnhancerDB
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Enhancers that have rs688219[chr1:201472491]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201463125 201475335 enh12520
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Large Intestine Bone (Osteoblast) Lung Blood (OCI-LY7) Placenta Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
Transcript factors that have rs688219[chr1:201472491]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201472386 201473036 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856480
chr1 201472398 201472843 ZNF143 GTRD no Epithelial (MCF-7) 21364403
chr1 201472398 201472843 ZNF143 GTRD no Epithelial (MCF-7) 107856481
chr1 201472419 201473672 POLR2A UCSC Txn Factor no Conserved 107856482
chr1 201472446 201472700 ZNF274 GTRD no Bone Marrow (K562) 107856483
chr1 201472450 201472853 ZNF274 GTRD no Bone Marrow (K562) 107856484
chr1 201472458 201472842 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364404
chr1 201472458 201472842 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107856485
chr1 201472468 201472958 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856486
chr1 201472475 201472491 POU4F3 JASPAR yes 34499345
chr1 201472477 201472491 POU4F1 JASPAR yes 34499347
chr1 201472477 201472492 HNF1A JASPAR yes 34499348
chr1 201472478 201472491 HNF1B JASPAR yes 34499349
chr1 201472478 201472494 POU4F3 JASPAR yes 34499350
chr1 201472484 201472495 HOXC12 JASPAR yes 34499351
chr1 201472484 201472495 HOXC13 JASPAR yes 34499352
chr1 201472485 201472834 ZNF143 GTRD no Epithelial (MCF-7) 21364405
chr1 201472485 201472834 ZNF143 GTRD no Epithelial (MCF-7) 107856487
chr1 201472486 201472758 ZNF274 GTRD no Bone Marrow (K562) 107856488
chr1 201472488 201472506 TP73 JASPAR yes 34499353
Genes associated with rs688219[chr1:201472491], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 201452658 201478584 - CSRP1 ENSG00000159176.9 201478584 0 Pancreas 0.0347453 1708
chr1 201452658 201478584 - CSRP1 ENSG00000159176.9 201478584 0 Thyroid 0.00381884 1708