EnhancerDB
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  3. rs71852722[chr1:29570933]
Enhancers that have rs71852722[chr1:29570933]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 29562585 29578758 enh11690
Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Astrocyte Muscle (A673) Placenta Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Thymus
Transcript factors that have rs71852722[chr1:29570933]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 29570924 29570934 GCM2 JASPAR yes 27809066
chr1 29570930 29570944 GATA2 JASPAR yes 27809067
chr1 29570932 29570938 GATA1 TRANSFAC yes 27809068
chr1 29570932 29570940 GATA5 JASPAR yes 27809069
Genes associated with rs71852722[chr1:29570933], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 28918712 28921955 + RAB42 ENSG00000188060.6 28918712 648978 Esophagus 0.156652 416