EnhancerDB
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  3. rs76466539[chr1:117011972]
Enhancers that have rs76466539[chr1:117011972]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs76466539[chr1:117011972]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117011964 117011980 SOX4 JASPAR yes 31809978
chr1 117011965 117011980 SOX21 JASPAR yes 31809979
chr1 117011967 117011985 ESR2 JASPAR yes 31809980
chr1 117011970 117011984 TLX1 JASPAR yes 31809981
Genes associated with rs76466539[chr1:117011972], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More