EnhancerDB
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  3. rs78142866[chr1:117017439]
Enhancers that have rs78142866[chr1:117017439]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78142866[chr1:117017439]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117016895 117017449 ZNF274 GTRD no Blood (GM12878) 21332821
chr1 117016933 117017622 ZNF274 GTRD no Blood (GM12878) 21332822
chr1 117017027 117018033 ZNF274 GTRD no Blood (GM12878) 21332823
chr1 117017027 117018033 ZNF274 GTRD no Blood (GM12878) 107824253
chr1 117017083 117018065 ZNF274 GTRD no Blood (GM12878) 21332824
chr1 117017083 117018065 ZNF274 GTRD no Blood (GM12878) 107824254
chr1 117017231 117018242 ZNF274 GTRD no Blood (GM12878) 21332825
chr1 117017231 117018242 ZNF274 GTRD no Blood (GM12878) 107824255
chr1 117017235 117018800 ZNF143 GTRD no Epithelial (MCF-7) 21332826
chr1 117017235 117018800 ZNF143 GTRD no Epithelial (MCF-7) 107824256
chr1 117017304 117018303 ZNF274 GTRD no Blood (GM12878) 21332827
chr1 117017304 117018303 ZNF274 GTRD no Blood (GM12878) 107824257
chr1 117017433 117017439 SOX10 JASPAR yes 31810777
Genes associated with rs78142866[chr1:117017439], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More