EnhancerDB
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  3. rs796720[chr12:54259609]
Enhancers that have rs796720[chr12:54259609]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54259293 54267755 enh43744
Cervix (HeLa-S3) Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs796720[chr12:54259609]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54258644 54259914 ZNF274 GTRD no Cervix (HeLa-S3) 21550101
chr12 54258644 54259924 ZNF274 GTRD no Cervix (HeLa-S3) 21550102
chr12 54258783 54260237 ZNF274 GTRD no Cervix (HeLa-S3) 21550103
chr12 54258935 54260224 ZNF274 GTRD no Cervix (HeLa-S3) 21550104
chr12 54258981 54260072 ZNF274 GTRD no Cervix (HeLa-S3) 21550105
chr12 54258981 54260500 ZNF274 GTRD no Cervix (HeLa-S3) 21550106
chr12 54259054 54259831 ZNF274 GTRD no Cervix (HeLa-S3) 21550107
chr12 54259069 54259905 ZNF274 GTRD no Cervix (HeLa-S3) 21550108
chr12 54259074 54260447 ZNF274 GTRD no Cervix (HeLa-S3) 21550109
chr12 54259082 54259765 ZNF274 GTRD no Cervix (HeLa-S3) 21550110
chr12 54259087 54259754 TCF7L2 GTRD no Colon (HCT116) 21550111
chr12 54259092 54259940 ZNF274 GTRD no Cervix (HeLa-S3) 21550112
chr12 54259158 54260089 ZNF274 GTRD no Cervix (HeLa-S3) 21550113
chr12 54259188 54259963 MYOD GTRD no Muscle (Myoblast) 21550114
chr12 54259207 54259811 TCF7L2 GTRD no Colon (HCT116) 21550116
chr12 54259228 54259794 TCF7L2 GTRD no Colon (HCT116) 21550117
chr12 54259392 54259869 ZNF274 GTRD no Cervix (HeLa-S3) 21550118
chr12 54259475 54259714 SOX2 GTRD no Neural Stem Cells (H9) 21550119
chr12 54259479 54259740 ZNF143 GTRD no Epithelial (MCF-7) 21550120
chr12 54259489 54259734 TCF7L2 GTRD no Colon (HCT116) 21550121
chr12 54259524 54259705 SOX2 GTRD no Neural Stem Cells (H9) 21550122
chr12 54259538 54259741 SOX2 GTRD no Neural Stem Cells (H9) 21550123
chr12 54259604 54259619 PRDM1 JASPAR yes 121015203
chr12 54259604 54259622 IRF2 JASPAR yes 121015204
Genes associated with rs796720[chr12:54259609], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More