EnhancerDB
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  3. rs7979669[chr12:54262217]
Enhancers that have rs7979669[chr12:54262217]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54259293 54267755 enh43744
Cervix (HeLa-S3) Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs7979669[chr12:54262217]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54261249 54263144 ZNF274 GTRD no Cervix (HeLa-S3) 21550126
chr12 54261465 54263029 ZNF274 GTRD no Cervix (HeLa-S3) 21550144
chr12 54261485 54263197 ZNF274 GTRD no Cervix (HeLa-S3) 21550149
chr12 54261491 54263244 ZNF274 GTRD no Cervix (HeLa-S3) 21550151
chr12 54261547 54263150 ZNF274 GTRD no Cervix (HeLa-S3) 21550156
chr12 54261626 54263213 ZNF274 GTRD no Cervix (HeLa-S3) 21550160
chr12 54261647 54263126 ZNF274 GTRD no Cervix (HeLa-S3) 21550161
chr12 54261715 54263208 ZNF274 GTRD no Cervix (HeLa-S3) 21550162
chr12 54261736 54263026 ZNF274 GTRD no Cervix (HeLa-S3) 21550163
chr12 54261850 54263051 TCF7L2 GTRD no Colon (HCT116) 21550164
chr12 54261990 54263075 ZNF274 GTRD no Cervix (HeLa-S3) 21550165
chr12 54262038 54262972 ZNF274 GTRD no Cervix (HeLa-S3) 21550166
chr12 54262042 54263022 ZNF274 GTRD no Cervix (HeLa-S3) 21550167
chr12 54262043 54263049 ZNF274 GTRD no Cervix (HeLa-S3) 21550168
chr12 54262134 54262883 ZNF143 GTRD no Epithelial (MCF-7) 21550169
chr12 54262166 54262852 ZNF143 GTRD no Epithelial (MCF-7) 21550170
chr12 54262173 54262629 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21550171
chr12 54262194 54263066 ZNF143 GTRD no Epithelial (MCF-7) 21550172
chr12 54262200 54262221 IRF1 JASPAR yes 121015613
chr12 54262202 54262223 IRF1 JASPAR yes 121015615
chr12 54262205 54262226 IRF1 JASPAR yes 121015616
chr12 54262206 54262221 FOXP1 JASPAR yes 121015617
chr12 54262209 54262230 IRF1 JASPAR yes 121015618
chr12 54262210 54262225 FOXP1 JASPAR yes 121015619
chr12 54262211 54262232 IRF1 JASPAR yes 121015620
chr12 54262215 54262230 PRDM1 JASPAR yes 121015621
chr12 54262215 54262236 IRF1 JASPAR yes 121015622
chr12 54262216 54262231 FOXP1 JASPAR yes 121015623
chr12 54262217 54262232 IRF9 JASPAR yes 121015624
Genes associated with rs7979669[chr12:54262217], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More