EnhancerDB
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  3. rs879628[chr16:88522556]
Enhancers that have rs879628[chr16:88522556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88521345 88553535 enh4185
Bone Marrow (K562) Brain (SK-N-SH) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Liver Blood (T-cell) Lung Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Pancreas Thymus Heart
Transcript factors that have rs879628[chr16:88522556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88521059 88523088 ZNF143 GTRD no Epithelial (MCF-7) 21736451
chr16 88521059 88523088 ZNF143 GTRD no Epithelial (MCF-7) 108222228
chr16 88521080 88523106 ZNF143 GTRD no Epithelial (MCF-7) 21736454
chr16 88521080 88523106 ZNF143 GTRD no Epithelial (MCF-7) 108222232
chr16 88521139 88523177 TCF7L2 GTRD no Colon (HCT116) 21736457
chr16 88521139 88523177 TCF7L2 GTRD no Colon (HCT116) 108222236
chr16 88521149 88529068 TCF7L2 GTRD no Colon (HCT116) 21736458
chr16 88521149 88529068 TCF7L2 GTRD no Colon (HCT116) 108222237
chr16 88521323 88522606 GATA3 UCSC Txn Factor no Conserved 108222244
chr16 88522549 88522559 GBX2 JASPAR yes 12285944
chr16 88522549 88522559 MNX1 JASPAR yes 12285945
chr16 88522550 88522558 BARX1 JASPAR yes 12285946
chr16 88522550 88522558 BSX JASPAR yes 12285947
chr16 88522550 88522558 ISL2 JASPAR yes 12285948
chr16 88522550 88522558 LMX1B JASPAR yes 12285949
chr16 88522550 88522558 MSX1 JASPAR yes 12285950
chr16 88522550 88522558 MSX2 JASPAR yes 12285951
chr16 88522553 88522562 NFIX JASPAR yes 12285952
chr16 88522553 88522563 NFIA JASPAR yes 12285953
chr16 88522555 88522561 NFIC JASPAR yes 12285954
Genes associated with rs879628[chr16:88522556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More