EnhancerDB
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  3. rs956009[chr1:200261257]
Enhancers that have rs956009[chr1:200261257]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200249825 200279179 enh867
Prostate (PC-3) Liver (HepG2) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs956009[chr1:200261257]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200260386 200261380 ZNF143 GTRD no Epithelial (MCF-7) 21362792
chr1 200260406 200261440 ZNF143 GTRD no Epithelial (MCF-7) 21362793
chr1 200260419 200261316 ZNF143 GTRD no Epithelial (MCF-7) 21362795
chr1 200260468 200261410 ZNF274 GTRD no Liver (HepG2) 21362798
chr1 200260486 200261435 ZNF274 GTRD no Liver (HepG2) 21362799
chr1 200260509 200261428 ZNF274 GTRD no Liver (HepG2) 21362800
chr1 200260556 200261350 ZNF274 GTRD no Liver (HepG2) 21362806
chr1 200260598 200261516 ZNF274 GTRD no Liver (HepG2) 21362808
chr1 200260633 200261367 ZNF143 GTRD no Epithelial (MCF-7) 21362811
chr1 200260682 200261349 ZNF143 GTRD no Epithelial (MCF-7) 21362813
chr1 200261254 200261269 FOXP1 JASPAR yes 34430113
chr1 200261254 200261269 MEF2C JASPAR yes 34430114
chr1 200261255 200261266 FOXP2 JASPAR yes 34430115
chr1 200261255 200261267 MEF2A JASPAR yes 34430116
Genes associated with rs956009[chr1:200261257], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More