EnhancerDB
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  3. rs9749470[chr19:10352309]
Enhancers that have rs9749470[chr19:10352309]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10331225 10355975 enh5000
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung Blood (OCI-LY7) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas Uterus Blood (T-cell) Heart
Transcript factors that have rs9749470[chr19:10352309]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10352200 10354827 TCF7L2 GTRD no Colon (HCT116) 21848622
chr19 10352200 10354827 TCF7L2 GTRD no Colon (HCT116) 108383131
chr19 10352258 10352578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848623
chr19 10352258 10352578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383132
chr19 10352268 10353272 TCF7L2 GTRD no Colon (HCT116) 21848624
chr19 10352268 10353272 TCF7L2 GTRD no Colon (HCT116) 108383133
chr19 10352289 10354784 TCF7L2 GTRD no Colon (HCT116) 21848625
chr19 10352289 10354784 TCF7L2 GTRD no Colon (HCT116) 108383134
chr19 10352291 10354422 ZNF143 GTRD no Epithelial (MCF-7) 21848626
chr19 10352291 10354422 ZNF143 GTRD no Epithelial (MCF-7) 108383135
chr19 10352291 10354706 TCF7L2 GTRD no Colon (HCT116) 21848627
chr19 10352291 10354706 TCF7L2 GTRD no Colon (HCT116) 108383136
chr19 10352304 10352325 IRF1 JASPAR yes 112416334
Genes associated with rs9749470[chr19:10352309], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More