EnhancerDB
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Enhancers that regulate RNF13[ENSG00000082996.15]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 149499134 149499345 vista42748 149530495 31150
VISTA
chr3 149527606 149527898 vista42749 149530495 2597
VISTA
chr3 149533104 149533741 vista42750 149530495 2609
VISTA
chr3 149547573 149547803 vista42751 149530495 17078
VISTA
chr3 149555645 149568295 enh7611 149530495 25150
Liver (HepG2) Blood (Karpas-422)
chr3 149566176 149566232 vista42752 149530495 35681
VISTA
chr3 149576785 149580935 enh113327 149530495 46290
Brain (SK-N-MC)
chr3 149592323 149592638 vista42753 149530495 61828
VISTA
chr3 149613637 149618871 enh35980 149530495 83142
Muscle (Myoblast) Astrocyte Colon (HCT116) Heart
Transcript facotrs that regulate RNF13[ENSG00000082996.15]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 149527606 149527614 MGA JASPAR yes 149530495 2881 71065856
chr3 149527606 149527614 TBX15 JASPAR yes 149530495 2881 71065857
chr3 149527606 149527614 TBX1 JASPAR yes 149530495 2881 71065858
chr3 149527606 149527614 TBX4 JASPAR yes 149530495 2881 71065859
chr3 149527606 149527614 TBX5 JASPAR yes 149530495 2881 71065860
chr3 149527613 149527617 H1TF2 TRANSFAC yes 149530495 2878 71065861
chr3 149527613 149527617 NFE TRANSFAC yes 149530495 2878 71065862
chr3 149527613 149527617 SRF TRANSFAC yes 149530495 2878 71065863
chr3 149527615 149527627 PROX1 JASPAR yes 149530495 2868 71065864
chr3 149527622 149527634 YY1 JASPAR yes 149530495 2861 71065865
chr3 149527635 149527648 ATF4 JASPAR yes 149530495 2847 71065866
chr3 149527639 149527653 ATF7 JASPAR yes 149530495 2842 71065867
chr3 149527640 149527644 YY1 TRANSFAC yes 149530495 2851 71065868
chr3 149527640 149527652 DBP JASPAR yes 149530495 2843 71065869
chr3 149527640 149527652 HLF JASPAR yes 149530495 2843 71065870
chr3 149527640 149527652 JDP2 JASPAR yes 149530495 2843 71065871
chr3 149527640 149527655 JUND JASPAR yes 149530495 2840 71065872
chr3 149527646 149527656 TFEB JASPAR yes 149530495 2839 71065873
chr3 149527646 149527657 USF1 JASPAR yes 149530495 2838 71065874
chr3 149527654 149527667 POU2F2 JASPAR yes 149530495 2828 71065875
chr3 149527668 149527672 YY1 TRANSFAC yes 149530495 2823 71065876
chr3 149527668 149527679 CEBPA JASPAR yes 149530495 2816 71065877
chr3 149527669 149527679 CEBPD JASPAR yes 149530495 2816 71065878
chr3 149527670 149527681 NFIL3 JASPAR yes 149530495 2814 71065879
chr3 149527678 149527683 ETS2 TRANSFAC yes 149530495 2812 71065880
chr3 149527681 149527687 LEF1 TRANSFAC yes 149530495 2808 71065881
chr3 149527681 149527687 SOX10 JASPAR yes 149530495 2808 71065882
chr3 149527685 149527696 FOXA1 JASPAR yes 149530495 2799 71065883
chr3 149527695 149527702 SPIB JASPAR yes 149530495 2793 71065884
chr3 149527700 149527712 GRHL1 JASPAR yes 149530495 2783 71065885
chr3 149527701 149527711 TFCP2 JASPAR yes 149530495 2784 71065886
chr3 149527717 149527723 TCF4 TRANSFAC yes 149530495 2772 71065887
chr3 149527718 149527733 PRDM1 JASPAR yes 149530495 2762 71065888
chr3 149527721 149527726 ETS2 TRANSFAC yes 149530495 2769 71065889
chr3 149527731 149527744 POU2F2 JASPAR yes 149530495 2751 71065890
chr3 149527731 149527745 POU1F1 JASPAR yes 149530495 2750 71065891
chr3 149527732 149527744 POU3F1 JASPAR yes 149530495 2751 71065892
chr3 149527732 149527744 POU3F2 JASPAR yes 149530495 2751 71065893
chr3 149527732 149527745 POU3F3 JASPAR yes 149530495 2750 71065894
chr3 149527733 149527745 POU2F1 JASPAR yes 149530495 2750 71065895
chr3 149527734 149527741 POU2F1 TRANSFAC yes 149530495 2754 71065896
chr3 149527734 149527741 POU2F2C TRANSFAC yes 149530495 2754 71065897
chr3 149527734 149527741 POU2F2 TRANSFAC yes 149530495 2754 71065898
chr3 149527734 149527743 POU3F4 JASPAR yes 149530495 2752 71065899
chr3 149527734 149527743 POU5F1B JASPAR yes 149530495 2752 71065900
chr3 149527745 149527749 ESR1 TRANSFAC yes 149530495 2746 71065901
chr3 149527769 149527772 MYB TRANSFAC yes 149530495 2723 71065902
chr3 149527783 149527792 SRY JASPAR yes 149530495 2703 71065903
chr3 149527785 149527794 SOX9 JASPAR yes 149530495 2701 71065904
chr3 149527800 149527804 YY1 TRANSFAC yes 149530495 2691 71065905
chr3 149527812 149527817 MYB TRANSFAC yes 149530495 2678 71065906
chr3 149527818 149527822 YY1 TRANSFAC yes 149530495 2673 71065907
chr3 149527850 149527867 BCL6B JASPAR yes 149530495 2628 71065908
chr3 149527871 149527876 GATA2 JASPAR yes 149530495 2619 71065909
chr3 149527878 149527884 LEF1 TRANSFAC yes 149530495 2611 71065910
chr3 149527878 149527884 SOX10 JASPAR yes 149530495 2611 71065911
chr3 149533120 149533124 ESR1 TRANSFAC yes 149530495 2625 71065912
chr3 149533124 149533141 ZNF410 JASPAR yes 149530495 2629 71065913
chr3 149533126 149533130 NFE TRANSFAC yes 149530495 2631 71065914
chr3 149533131 149533141 TEAD1 JASPAR yes 149530495 2636 71065915
chr3 149533138 149533149 NRL JASPAR yes 149530495 2643 71065916
chr3 149533148 149533164 T JASPAR yes 149530495 2653 71065917
chr3 149533151 149533168 ESR1 JASPAR yes 149530495 2656 71065918
chr3 149533155 149533165 TBX21 JASPAR yes 149530495 2660 71065919
chr3 149533155 149533166 TBX20 JASPAR yes 149530495 2660 71065920
chr3 149533155 149533166 TBX2 JASPAR yes 149530495 2660 71065921
chr3 149533155 149533168 EOMES JASPAR yes 149530495 2660 71065922
chr3 149533156 149533164 MGA JASPAR yes 149530495 2661 71065923
chr3 149533156 149533164 TBX15 JASPAR yes 149530495 2661 71065924
chr3 149533156 149533164 TBX1 JASPAR yes 149530495 2661 71065925
chr3 149533156 149533164 TBX4 JASPAR yes 149530495 2661 71065926
chr3 149533156 149533164 TBX5 JASPAR yes 149530495 2661 71065927
chr3 149533156 149533166 TBR1 JASPAR yes 149530495 2661 71065928
chr3 149533159 149533170 ESRRB JASPAR yes 149530495 2664 71065929
chr3 149533160 149533174 RORA JASPAR yes 149530495 2665 71065930
chr3 149533161 149533171 RORA JASPAR yes 149530495 2666 71065931
chr3 149533167 149533173 HiNF-A TRANSFAC yes 149530495 2672 71065932
chr3 149533173 149533182 HIC2 JASPAR yes 149530495 2678 71065933
chr3 149533175 149533181 NFIC JASPAR yes 149530495 2680 71065934
chr3 149533178 149533190 POU3F1 JASPAR yes 149530495 2683 71065935
chr3 149533179 149533183 YY1 TRANSFAC yes 149530495 2684 71065936
chr3 149533179 149533191 POU2F1 JASPAR yes 149530495 2684 71065937
chr3 149533180 149533189 POU5F1B JASPAR yes 149530495 2685 71065938
chr3 149533185 149533194 SRY JASPAR yes 149530495 2690 71065939
chr3 149533187 149533190 MYB TRANSFAC yes 149530495 2692 71065940
chr3 149533191 149533203 MEF2A JASPAR yes 149530495 2696 71065941
chr3 149533192 149533202 MEF2A JASPAR yes 149530495 2697 71065942
chr3 149533193 149533197 YY1 TRANSFAC yes 149530495 2698 71065943
chr3 149533215 149533223 FOXO3 JASPAR yes 149530495 2720 71065944
chr3 149533262 149533266 YY1 TRANSFAC yes 149530495 2767 71065945
chr3 149533267 149533282 FOXA1 JASPAR yes 149530495 2772 71065946
chr3 149533269 149533283 FOXF2 JASPAR yes 149530495 2774 71065947
chr3 149533270 149533278 FOXD1 JASPAR yes 149530495 2775 71065948
chr3 149533270 149533278 FOXG1 JASPAR yes 149530495 2775 71065949
chr3 149533270 149533278 FOXO3 JASPAR yes 149530495 2775 71065950
chr3 149533271 149533278 FOXD2 JASPAR yes 149530495 2776 71065951
chr3 149533271 149533278 FOXI1 JASPAR yes 149530495 2776 71065952
chr3 149533271 149533278 FOXL1 JASPAR yes 149530495 2776 71065953
chr3 149533271 149533278 FOXO4 JASPAR yes 149530495 2776 71065954
chr3 149533271 149533278 FOXO6 JASPAR yes 149530495 2776 71065955
chr3 149533271 149533278 FOXP3 JASPAR yes 149530495 2776 71065956
chr3 149533271 149533279 FOXO3 JASPAR yes 149530495 2776 71065957
chr3 149533274 149533286 TAL1 JASPAR yes 149530495 2779 71065958
chr3 149533275 149533287 BHLHE23 JASPAR yes 149530495 2780 71065959
chr3 149533276 149533286 BHLHE22 JASPAR yes 149530495 2781 71065960
chr3 149533276 149533286 NEUROD2 JASPAR yes 149530495 2781 71065961
chr3 149533276 149533286 NEUROG2 JASPAR yes 149530495 2781 71065962
chr3 149533276 149533286 OLIG1 JASPAR yes 149530495 2781 71065963
chr3 149533276 149533286 OLIG2 JASPAR yes 149530495 2781 71065964
chr3 149533276 149533286 OLIG3 JASPAR yes 149530495 2781 71065965
chr3 149533276 149533288 TAL1 JASPAR yes 149530495 2781 71065966
chr3 149533309 149533330 IRF1 JASPAR yes 149530495 2814 71065967
chr3 149533313 149533327 SPI1 JASPAR yes 149530495 2818 71065968
chr3 149533313 149533327 SPIC JASPAR yes 149530495 2818 71065969
chr3 149533319 149533324 ETS2 TRANSFAC yes 149530495 2824 71065970
chr3 149533338 149533349 DMRT3 JASPAR yes 149530495 2843 71065971
chr3 149533345 149533360 STAT1 JASPAR yes 149530495 2850 71065972
chr3 149533346 149533364 SRF JASPAR yes 149530495 2851 71065973
chr3 149533347 149533358 STAT3 JASPAR yes 149530495 2852 71065974
chr3 149533352 149533366 SPIC JASPAR yes 149530495 2857 71065975
chr3 149533354 149533375 IRF1 JASPAR yes 149530495 2859 71065976
chr3 149533355 149533366 ETV2 JASPAR yes 149530495 2860 71065977
chr3 149533356 149533363 SPIB JASPAR yes 149530495 2861 71065978
chr3 149533360 149533375 MEF2C JASPAR yes 149530495 2865 71065979
chr3 149533360 149533381 IRF1 JASPAR yes 149530495 2865 71065980
chr3 149533380 149533385 ETS2 TRANSFAC yes 149530495 2885 71065981
chr3 149533384 149533398 POU4F1 JASPAR yes 149530495 2889 71065982
chr3 149533397 149533411 JUN JASPAR yes 149530495 2902 71065983
chr3 149533400 149533411 FOSL2 JASPAR yes 149530495 2905 71065984
chr3 149533400 149533411 JUNB JASPAR yes 149530495 2905 71065985
chr3 149533401 149533412 FOS JASPAR yes 149530495 2906 71065986
chr3 149533401 149533412 FOSL1 JASPAR yes 149530495 2906 71065987
chr3 149533401 149533412 JUND JASPAR yes 149530495 2906 71065988
chr3 149533401 149533412 NFE2 JASPAR yes 149530495 2906 71065989
chr3 149533402 149533411 JDP2 JASPAR yes 149530495 2907 71065990
chr3 149533402 149533413 FOSL2 JASPAR yes 149530495 2907 71065991
chr3 149533402 149533413 JUNB JASPAR yes 149530495 2907 71065992
chr3 149533402 149533416 JUN JASPAR yes 149530495 2907 71065993
chr3 149533403 149533414 BATF JASPAR yes 149530495 2908 71065994
chr3 149533407 149533416 SOX9 JASPAR yes 149530495 2912 71065995
chr3 149533423 149533431 FOXL1 JASPAR yes 149530495 2928 71065996
chr3 149533435 149533447 FOXI1 JASPAR yes 149530495 2940 71065997
chr3 149533438 149533442 YY1 TRANSFAC yes 149530495 2943 71065998
chr3 149533453 149533457 TEAD2 TRANSFAC yes 149530495 2958 71065999
chr3 149533453 149533458 TBP TRANSFAC yes 149530495 2958 71066000
chr3 149533453 149533459 TFIID TRANSFAC yes 149530495 2958 71066001
chr3 149533459 149533474 HNF1A JASPAR yes 149530495 2964 71066002
chr3 149533460 149533472 HNF1B JASPAR yes 149530495 2965 71066003
chr3 149533460 149533473 HNF1B JASPAR yes 149530495 2965 71066004
chr3 149533478 149533491 HNF1B JASPAR yes 149530495 2983 71066005
chr3 149533482 149533495 POU2F2 JASPAR yes 149530495 2987 71066006
chr3 149533488 149533499 FOXH1 JASPAR yes 149530495 2993 71066007
chr3 149533490 149533494 YY1 TRANSFAC yes 149530495 2995 71066008
chr3 149533490 149533502 HLF JASPAR yes 149530495 2995 71066009
chr3 149533525 149533537 PBX1 JASPAR yes 149530495 3030 71066010
chr3 149533528 149533533 NFY TRANSFAC yes 149530495 3033 71066011
chr3 149533535 149533549 NR2F1 JASPAR yes 149530495 3040 71066012
chr3 149533559 149533570 FOXB1 JASPAR yes 149530495 3064 71066013
chr3 149533559 149533570 FOXC1 JASPAR yes 149530495 3064 71066014
chr3 149533559 149533571 FOXC2 JASPAR yes 149530495 3064 71066015
chr3 149533589 149533607 NFYA JASPAR yes 149530495 3094 71066016
chr3 149533591 149533605 ONECUT1 JASPAR yes 149530495 3096 71066017
chr3 149533591 149533605 ONECUT2 JASPAR yes 149530495 3096 71066018
chr3 149533591 149533605 ONECUT3 JASPAR yes 149530495 3096 71066019
chr3 149533592 149533602 CUX1 JASPAR yes 149530495 3097 71066020
chr3 149533592 149533608 NFYA JASPAR yes 149530495 3097 71066021
chr3 149533594 149533606 PBX1 JASPAR yes 149530495 3099 71066022
chr3 149533595 149533610 NFYB JASPAR yes 149530495 3100 71066023
chr3 149533597 149533602 NFY TRANSFAC yes 149530495 3102 71066024
chr3 149533604 149533620 E2F2 JASPAR yes 149530495 3109 71066025
chr3 149533625 149533633 ISL2 JASPAR yes 149530495 3130 71066026
chr3 149533625 149533634 NKX3-2 JASPAR yes 149530495 3130 71066027
chr3 149533635 149533639 TEAD2 TRANSFAC yes 149530495 3140 71066028
chr3 149533674 149533680 GATA3 JASPAR yes 149530495 3179 71066029
chr3 149533681 149533702 IRF1 JASPAR yes 149530495 3186 71066030
chr3 149533686 149533707 IRF1 JASPAR yes 149530495 3191 71066031
chr3 149533687 149533708 IRF1 JASPAR yes 149530495 3192 71066032
chr3 149533688 149533693 ETS2 TRANSFAC yes 149530495 3193 71066033
chr3 149533693 149533708 FOXP1 JASPAR yes 149530495 3198 71066034
chr3 149533694 149533706 FOXC2 JASPAR yes 149530495 3199 71066035
chr3 149533696 149533700 YY1 TRANSFAC yes 149530495 3201 71066036
chr3 149533715 149533734 PAX5 JASPAR yes 149530495 3220 71066037
SNPs associated with RNF13[ENSG00000082996.15], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 149531039 rs750152533 TGG T 0 Esophagus 0.175076 7104463
chr3 149026545 rs9917642 T C 503950 Esophagus 0.294363 7100352
chr3 149307257 rs11708035 C T 223238 Heart 0.321585 7102943
chr3 149090724 rs6440603 G A 439771 Heart 0.371852 7100856
chr3 149360280 rs115844960 C T 170215 Breast 0.0391268 7103648
chr3 148993079 rs7633905 A G 537416 Spleen 0.374247 7099985
chr3 149018214 rs76536116 G C 512281 Uterus 0.333894 7100251
chr3 149309411 rs6805577 A G 221084 Liver 0.0899122 7102974
chr3 149018060 rs145262261 G A 512435 Stomach 0.440184 7100249
Details of RNF13[ENSG00000082996.15]
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Genomic Location chr3:149530495-149679926[+]
TSS 149530495
Gene Name RNF13
Ensembl ID ENSG00000082996.15
ENTREZID 11342
Uniprot
O43567
Protein Name
E3 ubiquitin-protein ligase RNF13
Expression levels of RNF13[ENSG00000082996.15]
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