EnhancerDB
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Enhancers that regulate RFX4[ENSG00000111783.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 106884685 106888890 enh112032 106976685 87795
Brain (SK-N-MC)
chr12 106911411 106915887 enh115524 106976685 60798
Brain (SK-N-SH)
chr12 106975716 106975953 vista14770 106976685 732
VISTA
chr12 106980117 106980333 vista14771 106976685 3432
VISTA
chr12 106980953 106981296 vista14772 106976685 4268
VISTA
chr12 107001353 107001364 vista14773 106976685 24668
VISTA
chr12 107017905 107029455 enh14963 106976685 41220
Astrocyte Placenta Large Intestine
chr12 107040605 107044755 enh51383 106976685 63920
Large Intestine
chr12 107058305 107062455 enh47624 106976685 81620
Thymus
chr12 107064105 107068715 enh47625 106976685 87420
Neural Stem Cells (H9) Thymus
Transcript facotrs that regulate RFX4[ENSG00000111783.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 106974147 106977195 ZNF274 GTRD no Liver (HepG2) 106976685 510 108056097
chr12 106974220 106976868 ZNF274 GTRD no Bone Marrow (K562) 106976685 183 108056098
chr12 106974243 106976323 EZH2 UCSC Txn Factor no Conserved 106976685 362 108056099
chr12 106974268 106977056 ZNF274 GTRD no Liver (HepG2) 106976685 371 108056100
chr12 106975050 106975836 ZNF274 GTRD no Liver (HepG2) 106976685 849 108056101
chr12 106975077 106975875 ZNF274 GTRD no Bone Marrow (K562) 106976685 810 108056102
chr12 106975587 106977230 ZNF274 GTRD no Bone Marrow (K562) 106976685 545 108056103
chr12 106975616 106976286 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 399 108056104
chr12 106975698 106976307 ZNF274 GTRD no Bone Marrow (K562) 106976685 378 108056105
chr12 106975707 106976794 ZNF274 GTRD no Liver (HepG2) 106976685 109 108056106
chr12 106975717 106975738 ZNF263 JASPAR yes 106976685 947 82471172
chr12 106975717 106977169 ZNF274 GTRD no Liver (HepG2) 106976685 484 108056107
chr12 106975719 106975739 RREB1 JASPAR yes 106976685 946 82471173
chr12 106975727 106975732 SP1 TRANSFAC yes 106976685 953 82471174
chr12 106975729 106975750 ZNF263 JASPAR yes 106976685 935 82471175
chr12 106975730 106975745 NR2C2 JASPAR yes 106976685 940 82471176
chr12 106975732 106975737 SP1 TRANSFAC yes 106976685 948 82471177
chr12 106975733 106975743 ZNF740 JASPAR yes 106976685 942 82471178
chr12 106975734 106975739 TFAP2A TRANSFAC yes 106976685 946 82471179
chr12 106975734 106975740 MZF1 JASPAR yes 106976685 945 82471180
chr12 106975734 106975755 ZNF263 JASPAR yes 106976685 930 82471181
chr12 106975736 106975742 MAZ TRANSFAC yes 106976685 943 82471182
chr12 106975737 106975752 NR2C2 JASPAR yes 106976685 933 82471183
chr12 106975739 106975756 RXRA JASPAR yes 106976685 929 82471184
chr12 106975740 106975744 LFA1 TRANSFAC yes 106976685 941 82471185
chr12 106975740 106975752 INSM1 JASPAR yes 106976685 933 82471186
chr12 106975745 106975755 SP1 JASPAR yes 106976685 930 82471187
chr12 106975747 106975753 MAZ TRANSFAC yes 106976685 932 82471188
chr12 106975749 106975770 ZNF263 JASPAR yes 106976685 915 82471189
chr12 106975750 106975756 SP1 TRANSFAC yes 106976685 929 82471190
chr12 106975751 106975756 SP1 TRANSFAC yes 106976685 929 82471191
chr12 106975755 106975761 PEA3 TRANSFAC yes 106976685 924 82471192
chr12 106975762 106975775 SMAD2 JASPAR yes 106976685 910 82471193
chr12 106975771 106976192 ZNF274 GTRD no Bone Marrow (K562) 106976685 493 108056108
chr12 106975776 106976032 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 106976685 653 108056109
chr12 106975782 106975797 STAT1 JASPAR yes 106976685 888 82471194
chr12 106975784 106975795 STAT1 JASPAR yes 106976685 890 82471195
chr12 106975789 106975794 ETS2 TRANSFAC yes 106976685 891 82471196
chr12 106975789 106976405 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 280 108056110
chr12 106975790 106975811 ZNF263 JASPAR yes 106976685 874 82471197
chr12 106975791 106975812 ZNF263 JASPAR yes 106976685 873 82471198
chr12 106975792 106975801 SP1 TRANSFAC yes 106976685 884 82471199
chr12 106975793 106975803 SP1 JASPAR yes 106976685 882 82471200
chr12 106975793 106975814 ZNF263 JASPAR yes 106976685 871 82471201
chr12 106975794 106976917 ZNF274 GTRD no Liver (HepG2) 106976685 232 108056111
chr12 106975795 106975800 SP1 TRANSFAC yes 106976685 885 82471202
chr12 106975796 106975801 SP1 TRANSFAC yes 106976685 884 82471203
chr12 106975796 106975802 SP1 TRANSFAC yes 106976685 883 82471204
chr12 106975797 106975812 NR2C2 JASPAR yes 106976685 873 82471205
chr12 106975799 106975808 SP1 TRANSFAC yes 106976685 877 82471206
chr12 106975799 106975809 SP1 JASPAR yes 106976685 876 82471207
chr12 106975799 106975820 ZNF263 JASPAR yes 106976685 865 82471208
chr12 106975800 106975810 SP1 JASPAR yes 106976685 875 82471209
chr12 106975800 106976867 ZBTB33 GTRD no Lung (A549) 106976685 182 108056112
chr12 106975801 106975807 MAZ TRANSFAC yes 106976685 878 82471210
chr12 106975801 106975811 SP1 JASPAR yes 106976685 874 82471211
chr12 106975802 106975812 MZF1 JASPAR yes 106976685 873 82471212
chr12 106975805 106977294 ZNF274 GTRD no Liver (HepG2) 106976685 609 108056113
chr12 106975810 106976214 ZNF274 GTRD no Bone Marrow (K562) 106976685 471 108056114
chr12 106975812 106975827 AR JASPAR yes 106976685 858 82471213
chr12 106975820 106976133 ZNF274 GTRD no Cervix (HeLa-S3) 106976685 552 108056115
chr12 106975826 106975836 MZF1 JASPAR yes 106976685 849 82471214
chr12 106975829 106975850 ZNF263 JASPAR yes 106976685 835 82471215
chr12 106975832 106975837 GATA2 JASPAR yes 106976685 848 82471216
chr12 106975839 106977098 ZNF274 GTRD no Liver (HepG2) 106976685 413 108056116
chr12 106975844 106976790 ZNF274 GTRD no Bone Marrow (K562) 106976685 105 108056117
chr12 106975845 106975860 HNF4G JASPAR yes 106976685 825 82471217
chr12 106975846 106975861 HNF4A JASPAR yes 106976685 824 82471218
chr12 106975848 106975852 LFA1 TRANSFAC yes 106976685 833 82471219
chr12 106975853 106975867 PLAG1 JASPAR yes 106976685 818 82471220
chr12 106975858 106975868 MZF1 JASPAR yes 106976685 817 82471221
chr12 106975861 106975882 ZNF263 JASPAR yes 106976685 803 82471222
chr12 106975868 106975874 SOX10 JASPAR yes 106976685 811 82471223
chr12 106975875 106976119 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 566 108056118
chr12 106975880 106975890 SP1 JASPAR yes 106976685 795 82471224
chr12 106975881 106975891 SP1 JASPAR yes 106976685 794 82471225
chr12 106975893 106976825 ZNF274 GTRD no Liver (HepG2) 106976685 140 108056119
chr12 106975913 106975918 ETS2 TRANSFAC yes 106976685 767 82471226
chr12 106975913 106975921 EHF JASPAR yes 106976685 764 82471227
chr12 106975916 106975937 ZNF263 JASPAR yes 106976685 748 82471228
chr12 106975921 106975927 HiNF-A TRANSFAC yes 106976685 758 82471229
chr12 106975923 106976245 ZBTB33 GTRD no Lung (A549) 106976685 440 108056120
chr12 106975932 106976875 ZNF274 GTRD no Liver (HepG2) 106976685 190 108056121
chr12 106975941 106976784 ZNF274 GTRD no Liver (HepG2) 106976685 99 108056122
chr12 106975945 106976894 ZNF274 GTRD no Liver (HepG2) 106976685 209 108056123
chr12 106979125 106980176 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 2440 108056124
chr12 106979125 106980696 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 2440 108056125
chr12 106980132 106980147 NFYB JASPAR yes 106976685 3447 82471230
chr12 106980134 106980150 NFYA JASPAR yes 106976685 3449 82471231
chr12 106980135 106980153 NFYA JASPAR yes 106976685 3450 82471232
chr12 106980136 106980140 H4TF2 TRANSFAC yes 106976685 3451 82471233
chr12 106980139 106980143 H1TF2 TRANSFAC yes 106976685 3454 82471234
chr12 106980139 106980143 NFE TRANSFAC yes 106976685 3454 82471235
chr12 106980139 106980143 SRF TRANSFAC yes 106976685 3454 82471236
chr12 106980151 106980170 PAX5 JASPAR yes 106976685 3466 82471237
chr12 106980187 106980192 GATA2 JASPAR yes 106976685 3502 82471238
chr12 106980187 106980199 EHF JASPAR yes 106976685 3502 82471239
chr12 106980187 106980199 ELF1 JASPAR yes 106976685 3502 82471240
chr12 106980187 106980199 ELF4 JASPAR yes 106976685 3502 82471241
chr12 106980187 106980200 ELF3 JASPAR yes 106976685 3502 82471242
chr12 106980188 106980199 ELF5 JASPAR yes 106976685 3503 82471243
chr12 106980189 106980198 ELK4 JASPAR yes 106976685 3504 82471244
chr12 106980189 106980199 ELK3 JASPAR yes 106976685 3504 82471245
chr12 106980189 106980199 ERG JASPAR yes 106976685 3504 82471246
chr12 106980189 106980199 ETV1 JASPAR yes 106976685 3504 82471247
chr12 106980189 106980199 ETV4 JASPAR yes 106976685 3504 82471248
chr12 106980189 106980199 FEV JASPAR yes 106976685 3504 82471249
chr12 106980189 106980199 FLI1 JASPAR yes 106976685 3504 82471250
chr12 106980190 106980198 FEV JASPAR yes 106976685 3505 82471251
chr12 106980191 106980197 ETS1 JASPAR yes 106976685 3506 82471252
chr12 106980192 106980205 HSF1 JASPAR yes 106976685 3507 82471253
chr12 106980192 106980205 HSF2 JASPAR yes 106976685 3507 82471254
chr12 106980192 106980205 HSF4 JASPAR yes 106976685 3507 82471255
chr12 106980197 106980210 HSF2 JASPAR yes 106976685 3512 82471256
chr12 106980206 106980221 PRDM1 JASPAR yes 106976685 3521 82471257
chr12 106980229 106980249 PPARG JASPAR yes 106976685 3544 82471258
chr12 106980248 106980254 TCF4 TRANSFAC yes 106976685 3563 82471259
chr12 106980294 106980298 YY1 TRANSFAC yes 106976685 3609 82471260
chr12 106980311 106980317 YY1 JASPAR yes 106976685 3626 82471261
chr12 106980555 106981225 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 106976685 3870 108056126
chr12 106980931 106981265 TCF7L2 GTRD no Colon (HCT116) 106976685 4246 108056127
chr12 106980965 106981426 ZNF274 GTRD no Liver (HepG2) 106976685 4280 108056128
chr12 106980994 106981012 ESR1 JASPAR yes 106976685 4309 82471262
chr12 106980996 106981000 H4TF2 TRANSFAC yes 106976685 4311 82471263
chr12 106981009 106981015 ETS1 JASPAR yes 106976685 4324 82471264
chr12 106981018 106981030 INSM1 JASPAR yes 106976685 4333 82471265
chr12 106981023 106981028 SP1 TRANSFAC yes 106976685 4338 82471266
chr12 106981025 106981033 SMAD4 TRANSFAC yes 106976685 4340 82471267
chr12 106981027 106981032 SP1 TRANSFAC yes 106976685 4342 82471268
chr12 106981028 106981283 ZNF274 GTRD no Blood (GM12878) 106976685 4343 108056129
chr12 106981032 106981047 TFAP2A JASPAR yes 106976685 4347 82471269
chr12 106981035 106981046 TFAP2A JASPAR yes 106976685 4350 82471270
chr12 106981035 106981046 TFAP2B JASPAR yes 106976685 4350 82471271
chr12 106981035 106981046 TFAP2C JASPAR yes 106976685 4350 82471272
chr12 106981036 106981045 TFAP2A JASPAR yes 106976685 4351 82471273
chr12 106981046 106981056 RELA JASPAR yes 106976685 4361 82471274
chr12 106981046 106981056 REL JASPAR yes 106976685 4361 82471275
chr12 106981046 106981057 NFKB1 JASPAR yes 106976685 4361 82471276
chr12 106981047 106981057 RELA JASPAR yes 106976685 4362 82471277
chr12 106981049 106981054 H4TF1 TRANSFAC yes 106976685 4364 82471278
chr12 106981061 106981072 E2F4 JASPAR yes 106976685 4376 82471279
chr12 106981061 106981072 E2F6 JASPAR yes 106976685 4376 82471280
chr12 106981062 106981073 E2F1 JASPAR yes 106976685 4377 82471281
chr12 106981064 106981074 SP1 JASPAR yes 106976685 4379 82471282
chr12 106981065 106981072 SP1 TRANSFAC yes 106976685 4380 82471283
chr12 106981066 106981071 SP1 TRANSFAC yes 106976685 4381 82471284
chr12 106981066 106981072 SP1 TRANSFAC yes 106976685 4381 82471285
chr12 106981066 106981073 SP1 TRANSFAC yes 106976685 4381 82471286
chr12 106981070 106981080 SP1 JASPAR yes 106976685 4385 82471287
chr12 106981075 106981081 MZF1 JASPAR yes 106976685 4390 82471288
chr12 106981080 106981099 RFX2 JASPAR yes 106976685 4395 82471289
chr12 106981082 106981094 CREB1 JASPAR yes 106976685 4397 82471290
chr12 106981084 106981100 RFX2 JASPAR yes 106976685 4399 82471291
chr12 106981084 106981100 RFX3 JASPAR yes 106976685 4399 82471292
chr12 106981084 106981100 RFX4 JASPAR yes 106976685 4399 82471293
chr12 106981084 106981100 RFX5 JASPAR yes 106976685 4399 82471294
chr12 106981085 106981104 RFX2 JASPAR yes 106976685 4400 82471295
chr12 106981093 106981108 HSF1 JASPAR yes 106976685 4408 82471296
chr12 106981107 106981119 ZBTB7C JASPAR yes 106976685 4422 82471297
chr12 106981115 106981122 NFATC2 JASPAR yes 106976685 4430 82471298
chr12 106981115 106981126 FOXP2 JASPAR yes 106976685 4430 82471299
chr12 106981116 106981124 FOXO3 JASPAR yes 106976685 4431 82471300
chr12 106981154 106981159 MYC TRANSFAC yes 106976685 4469 82471301
chr12 106981171 106981178 SP1 TRANSFAC yes 106976685 4486 82471302
chr12 106981171 106981181 SP1 JASPAR yes 106976685 4486 82471303
chr12 106981171 106981192 ZNF263 JASPAR yes 106976685 4486 82471304
chr12 106981172 106981180 SP1 TRANSFAC yes 106976685 4487 82471305
chr12 106981173 106981178 SP1 TRANSFAC yes 106976685 4488 82471306
chr12 106981174 106981179 SP1 TRANSFAC yes 106976685 4489 82471307
chr12 106981174 106981180 SP1 TRANSFAC yes 106976685 4489 82471308
chr12 106981189 106981193 LFA1 TRANSFAC yes 106976685 4504 82471309
chr12 106981194 106981205 E2F1 JASPAR yes 106976685 4509 82471310
chr12 106981195 106981206 E2F4 JASPAR yes 106976685 4510 82471311
chr12 106981195 106981206 E2F6 JASPAR yes 106976685 4510 82471312
chr12 106981202 106981213 TFAP2C JASPAR yes 106976685 4517 82471313
chr12 106981218 106981232 TCF7L2 JASPAR yes 106976685 4533 82471314
chr12 106981223 106981229 SOX10 JASPAR yes 106976685 4538 82471315
chr12 106981235 106981248 ELF1 JASPAR yes 106976685 4550 82471316
chr12 106981240 106981255 PRDM1 JASPAR yes 106976685 4555 82471317
chr12 106981261 106981274 NFKB1 JASPAR yes 106976685 4576 82471318
chr12 106981261 106981274 NFKB2 JASPAR yes 106976685 4576 82471319
chr12 106981262 106981267 SP1 TRANSFAC yes 106976685 4577 82471320
chr12 106981262 106981273 NFKB1 JASPAR yes 106976685 4577 82471321
chr12 106981265 106981280 ZIC3 JASPAR yes 106976685 4580 82471322
chr12 106981266 106981277 E2F4 JASPAR yes 106976685 4581 82471323
chr12 106981268 106981282 ZIC1 JASPAR yes 106976685 4583 82471324
chr12 106981269 106981275 SP1 TRANSFAC yes 106976685 4584 82471325
SNPs associated with RFX4[ENSG00000111783.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 106275934 rs112423839 T A 700751 Thyroid 0.222631 2874175
Details of RFX4[ENSG00000111783.8]
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Genomic Location chr12:106976685-107156581[+]
TSS 106976685
Gene Name RFX4
Ensembl ID ENSG00000111783.8
ENTREZID 5992
Uniprot
Q33E94
Protein Name
Transcription factor RFX4
Expression levels of RFX4[ENSG00000111783.8]
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