EnhancerDB
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Enhancers that regulate SWT1[ENSG00000116668.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 185026592 185030836 enh115378 185126212 95376
Brain (SK-N-SH)
chr1 185032022 185032401 vista4244 185126212 93811
VISTA
chr1 185036625 185041475 enh813 185126212 84737
Large Intestine Blood (Karpas-422)
chr1 185041562 185046855 enh67186 185126212 79357
Neural Stem Cells (H9)
chr1 185047625 185051775 enh90746 185126212 74437
Bone Marrow (K562)
chr1 185109809 185110137 vista4245 185126212 16075
VISTA
chr1 185127324 185127657 vista4246 185126212 1112
VISTA
chr1 185129185 185129369 vista4247 185126212 2973
VISTA
chr1 185137605 185141755 enh111541 185126212 11393
Brain (SK-N-MC)
chr1 185211625 185221489 enh27316 185126212 85413
Bone Marrow (K562) Astrocyte Prostate (PC-3) Neural Stem Cells (H9)
chr1 185224825 185232075 enh79278 185126212 98613
Muscle (Myoblast) Prostate (PC-3) Cervix (HeLa-S3)
Transcript facotrs that regulate SWT1[ENSG00000116668.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 185127328 185127332 YY1 TRANSFAC yes 185126212 1116 118416117
chr1 185127329 185127339 NFIA JASPAR yes 185126212 1117 118416118
chr1 185127330 185127339 NFIX JASPAR yes 185126212 1118 118416119
chr1 185127331 185127337 NFIC JASPAR yes 185126212 1119 118416120
chr1 185127348 185127351 MYB TRANSFAC yes 185126212 1136 118416121
chr1 185127359 185127362 MYB TRANSFAC yes 185126212 1147 118416122
chr1 185127362 185127372 SP1 JASPAR yes 185126212 1150 118416123
chr1 185127391 185127411 RREB1 JASPAR yes 185126212 1179 118416124
chr1 185127393 185127413 RREB1 JASPAR yes 185126212 1181 118416125
chr1 185127415 185127418 MYB TRANSFAC yes 185126212 1203 118416126
chr1 185127422 185127428 MZF1 JASPAR yes 185126212 1210 118416127
chr1 185127428 185127438 HOXB13 JASPAR yes 185126212 1216 118416128
chr1 185127428 185127438 HOXD13 JASPAR yes 185126212 1216 118416129
chr1 185127429 185127439 GSX2 JASPAR yes 185126212 1217 118416130
chr1 185127430 185127438 BSX JASPAR yes 185126212 1218 118416131
chr1 185127445 185127450 GATA2 JASPAR yes 185126212 1233 118416132
chr1 185127502 185127512 MSC JASPAR yes 185126212 1290 118416133
chr1 185127508 185127516 GATA3 JASPAR yes 185126212 1296 118416134
chr1 185127532 185127543 BATF JASPAR yes 185126212 1320 118416135
chr1 185127533 185127544 FOSL2 JASPAR yes 185126212 1321 118416136
chr1 185127534 185127545 FOS JASPAR yes 185126212 1322 118416137
chr1 185127534 185127545 FOSL1 JASPAR yes 185126212 1322 118416138
chr1 185127534 185127545 NFE2 JASPAR yes 185126212 1322 118416139
chr1 185127535 185127544 JDP2 JASPAR yes 185126212 1323 118416140
chr1 185127553 185127563 GSX2 JASPAR yes 185126212 1341 118416141
chr1 185127553 185127563 HESX1 JASPAR yes 185126212 1341 118416142
chr1 185127553 185127563 LBX2 JASPAR yes 185126212 1341 118416143
chr1 185127553 185127563 MIXL1 JASPAR yes 185126212 1341 118416144
chr1 185127553 185127563 MNX1 JASPAR yes 185126212 1341 118416145
chr1 185127553 185127563 RAX JASPAR yes 185126212 1341 118416146
chr1 185127554 185127562 ISX JASPAR yes 185126212 1342 118416147
chr1 185127554 185127562 LHX9 JASPAR yes 185126212 1342 118416148
chr1 185127554 185127562 LMX1B JASPAR yes 185126212 1342 118416149
chr1 185127554 185127562 PRRX1 JASPAR yes 185126212 1342 118416150
chr1 185127554 185127562 RAX2 JASPAR yes 185126212 1342 118416151
chr1 185127554 185127562 SHOX JASPAR yes 185126212 1342 118416152
chr1 185127554 185127562 UNCX JASPAR yes 185126212 1342 118416153
chr1 185127567 185127572 GATA2 JASPAR yes 185126212 1355 118416154
chr1 185127570 185127573 MYB TRANSFAC yes 185126212 1358 118416155
chr1 185127580 185127584 TEAD2 TRANSFAC yes 185126212 1368 118416156
chr1 185127582 185127585 MYB TRANSFAC yes 185126212 1370 118416157
chr1 185127590 185127596 HiNF-A TRANSFAC yes 185126212 1378 118416158
chr1 185127598 185127601 MYB TRANSFAC yes 185126212 1386 118416159
chr1 185127618 185127622 H1TF2 TRANSFAC yes 185126212 1406 118416160
chr1 185127618 185127622 NFE TRANSFAC yes 185126212 1406 118416161
chr1 185127618 185127622 SRF TRANSFAC yes 185126212 1406 118416162
chr1 185127631 185127652 IRF1 JASPAR yes 185126212 1419 118416163
chr1 185127635 185127639 YY1 TRANSFAC yes 185126212 1423 118416164
chr1 185127635 185127656 IRF1 JASPAR yes 185126212 1423 118416165
chr1 185127636 185127651 FOXP1 JASPAR yes 185126212 1424 118416166
chr1 185127638 185127653 FOXP1 JASPAR yes 185126212 1426 118416167
chr1 185127640 185127655 FOXP1 JASPAR yes 185126212 1428 118416168
chr1 185127641 185127656 FOXP1 JASPAR yes 185126212 1429 118416169
chr1 185127642 185127657 FOXP1 JASPAR yes 185126212 1430 118416170
chr1 185129005 185129525 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 2793 107852009
chr1 185129025 185129545 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 2813 107852010
chr1 185129069 185129439 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 2857 107852011
chr1 185129157 185129430 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 2945 107852012
chr1 185129197 185129207 SP1 JASPAR yes 185126212 2985 118416171
chr1 185129200 185129496 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 2988 107852013
chr1 185129206 185129220 ONECUT2 JASPAR yes 185126212 2994 118416172
chr1 185129206 185129220 ONECUT3 JASPAR yes 185126212 2994 118416173
chr1 185129212 185129216 YY1 TRANSFAC yes 185126212 3000 118416174
chr1 185129213 185129224 HOXC12 JASPAR yes 185126212 3001 118416175
chr1 185129213 185129224 HOXC13 JASPAR yes 185126212 3001 118416176
chr1 185129216 185129355 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 185126212 3004 107852014
chr1 185129230 185129236 SOX10 JASPAR yes 185126212 3018 118416177
chr1 185129235 185129250 MEF2C JASPAR yes 185126212 3023 118416178
chr1 185129239 185129245 TBP TRANSFAC yes 185126212 3027 118416179
chr1 185129246 185129256 TFEB JASPAR yes 185126212 3034 118416180
chr1 185129246 185129256 TFEC JASPAR yes 185126212 3034 118416181
chr1 185129246 185129257 USF1 JASPAR yes 185126212 3034 118416182
chr1 185129246 185129257 USF2 JASPAR yes 185126212 3034 118416183
chr1 185129247 185129257 MAX JASPAR yes 185126212 3035 118416184
chr1 185129257 185129263 NFIC JASPAR yes 185126212 3045 118416185
chr1 185129275 185129286 BATF JASPAR yes 185126212 3063 118416186
chr1 185129285 185129300 MEF2A JASPAR yes 185126212 3073 118416187
chr1 185129286 185129301 MEF2C JASPAR yes 185126212 3074 118416188
chr1 185129289 185129293 YY1 TRANSFAC yes 185126212 3077 118416189
chr1 185129292 185129313 IRF1 JASPAR yes 185126212 3080 118416190
chr1 185129294 185129309 IRF9 JASPAR yes 185126212 3082 118416191
chr1 185129295 185129308 ISGF3 TRANSFAC yes 185126212 3083 118416192
chr1 185129295 185129309 IRF7 JASPAR yes 185126212 3083 118416193
chr1 185129295 185129309 IRF8 JASPAR yes 185126212 3083 118416194
chr1 185129296 185129310 STAT1 JASPAR yes 185126212 3084 118416195
chr1 185129296 185129311 PRDM1 JASPAR yes 185126212 3084 118416196
chr1 185129296 185129311 STAT2 JASPAR yes 185126212 3084 118416197
chr1 185129296 185129314 IRF2 JASPAR yes 185126212 3084 118416198
chr1 185129297 185129309 IRF1 JASPAR yes 185126212 3085 118416199
chr1 185129305 185129319 JUN JASPAR yes 185126212 3093 118416200
chr1 185129308 185129319 JUNB JASPAR yes 185126212 3096 118416201
chr1 185129309 185129320 JUND JASPAR yes 185126212 3097 118416202
chr1 185129310 185129319 JDP2 JASPAR yes 185126212 3098 118416203
chr1 185129313 185129323 EN2 JASPAR yes 185126212 3101 118416204
chr1 185129313 185129323 ESX1 JASPAR yes 185126212 3101 118416205
chr1 185129313 185129323 GBX1 JASPAR yes 185126212 3101 118416206
chr1 185129313 185129323 GBX2 JASPAR yes 185126212 3101 118416207
chr1 185129313 185129323 HESX1 JASPAR yes 185126212 3101 118416208
chr1 185129313 185129323 LBX2 JASPAR yes 185126212 3101 118416209
chr1 185129313 185129323 LHX2 JASPAR yes 185126212 3101 118416210
chr1 185129313 185129323 RAX JASPAR yes 185126212 3101 118416211
chr1 185129314 185129322 BARX1 JASPAR yes 185126212 3102 118416212
chr1 185129314 185129322 BSX JASPAR yes 185126212 3102 118416213
chr1 185129314 185129322 EN1 JASPAR yes 185126212 3102 118416214
chr1 185129314 185129322 ISX JASPAR yes 185126212 3102 118416215
chr1 185129314 185129322 LHX9 JASPAR yes 185126212 3102 118416216
chr1 185129314 185129322 MSX1 JASPAR yes 185126212 3102 118416217
chr1 185129314 185129322 MSX2 JASPAR yes 185126212 3102 118416218
chr1 185129314 185129322 PRRX1 JASPAR yes 185126212 3102 118416219
chr1 185129314 185129322 RAX2 JASPAR yes 185126212 3102 118416220
chr1 185129314 185129322 SHOX JASPAR yes 185126212 3102 118416221
chr1 185129319 185129333 TCF7L2 JASPAR yes 185126212 3107 118416222
chr1 185129324 185129333 NKX2-8 JASPAR yes 185126212 3112 118416223
chr1 185129363 185129368 MYC TRANSFAC yes 185126212 3151 118416224
SNPs associated with SWT1[ENSG00000116668.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 184886381 rs234678 A G 239831 Esophagus 0.0925642 789879
chr1 185607794 rs61829631 C G,T 346897 Heart 0.346675 794829
chr1 185126998 rs78981068 T A,C,G 0 Pancreas 2.20337e-07 791208
chr1 185530814 rs74547553 G A 269917 Breast 0.34385 793984
chr1 186122414 rs17466086 T A,C 861517 Ovary 0.58433 797585
chr1 185576037 rs59587435 T A,C 315140 Uterus 0.372631 794473
chr1 185734846 rs111997573 A G 473949 Lung 0.143544 795933
chr1 185437962 rs232294 G A 177065 Adrenal 0.356408 793094
Details of SWT1[ENSG00000116668.8]
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Genomic Location chr1:185126212-185260897[+]
TSS 185126212
Gene Name SWT1
Ensembl ID ENSG00000116668.8
ENTREZID 54823
Uniprot
Q5T5J6
B3KXU9
Protein Name
Transcriptional protein SWT1
Expression levels of SWT1[ENSG00000116668.8]
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