EnhancerDB
  1. Home
  2. Gene
  3. RTF1[ENSG00000137815.10]
Enhancers that regulate RTF1[ENSG00000137815.10]
Back to top
Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 41613965 41618115 enh104094 41700606 82491
Peripheral Blood (MM.1S)
chr15 41701982 41702123 vista19755 41700606 1376
VISTA
chr15 41714432 41719293 enh86185 41700606 13826
Colon (HCT116) Peripheral Blood (MM.1S) Blood (GM12878)
chr15 41719540 41724198 enh87020 41700606 18934
Peripheral Blood (MM.1S) Blood (GM12878)
chr15 41741039 41741403 vista19756 41700606 40433
VISTA
chr15 41752265 41756915 enh75630 41700606 51659
Muscle (A673) Brain (SK-N-MC)
chr15 41788010 41788393 vista19757 41700606 87404
VISTA
chr15 41789405 41793555 enh75631 41700606 88799
Muscle (A673)
Transcript facotrs that regulate RTF1[ENSG00000137815.10]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 41701802 41702318 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1196 108134903
chr15 41701830 41702286 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1224 108134904
chr15 41701840 41702236 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1234 108134905
chr15 41701849 41702265 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1243 108134906
chr15 41701851 41702255 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1245 108134907
chr15 41701874 41702230 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1268 108134908
chr15 41701884 41702220 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1278 108134909
chr15 41701889 41702289 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1283 108134910
chr15 41701901 41702181 MAFK UCSC Txn Factor no Conserved 41700606 1295 108134911
chr15 41701901 41702181 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1295 108134912
chr15 41701903 41702159 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1297 108134913
chr15 41701914 41702264 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1308 108134914
chr15 41701926 41702150 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1320 108134915
chr15 41701929 41702185 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1323 108134916
chr15 41701936 41702186 JUND UCSC Txn Factor no Conserved 41700606 1330 108134917
chr15 41701936 41702186 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1330 108134918
chr15 41701955 41702167 CEBPB UCSC Txn Factor no Conserved 41700606 1349 108134919
chr15 41701955 41702167 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1349 108134920
chr15 41701956 41702200 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1350 108134921
chr15 41701965 41702105 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1359 108134922
chr15 41701972 41702183 TAL1 UCSC Txn Factor no Conserved 41700606 1366 108134923
chr15 41701972 41702183 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1366 108134924
chr15 41701980 41702146 TEAD4 UCSC Txn Factor no Conserved 41700606 1374 108134925
chr15 41701980 41702146 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1374 108134926
chr15 41701985 41702085 MAFF UCSC Txn Factor no Conserved 41700606 1379 108134927
chr15 41701985 41702085 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 41700606 1379 108134928
chr15 41702001 41702015 SPI1 JASPAR yes 41700606 1395 70513458
chr15 41702009 41702013 YY1 TRANSFAC yes 41700606 1403 70513459
chr15 41702010 41702022 POU2F1 JASPAR yes 41700606 1404 70513460
chr15 41702012 41702026 TLX1 JASPAR yes 41700606 1406 70513461
chr15 41702013 41702027 TLX1 JASPAR yes 41700606 1407 70513462
chr15 41702019 41702028 NFIX JASPAR yes 41700606 1413 70513463
chr15 41702019 41702029 NFIA JASPAR yes 41700606 1413 70513464
chr15 41702021 41702027 NFIC JASPAR yes 41700606 1415 70513465
chr15 41702021 41702032 NFE2L2 JASPAR yes 41700606 1415 70513466
chr15 41702033 41702053 ESR1 JASPAR yes 41700606 1427 70513467
chr15 41702034 41702049 JUND JASPAR yes 41700606 1428 70513468
chr15 41702036 41702044 CREB1 JASPAR yes 41700606 1430 70513469
chr15 41702037 41702045 NR4A2 JASPAR yes 41700606 1431 70513470
chr15 41702038 41702053 ESR2 JASPAR yes 41700606 1432 70513471
chr15 41702039 41702043 ESR1 TRANSFAC yes 41700606 1433 70513472
chr15 41702055 41702066 CEBPA JASPAR yes 41700606 1449 70513473
chr15 41702066 41702080 GATA2 JASPAR yes 41700606 1460 70513474
chr15 41702068 41702083 TP53 JASPAR yes 41700606 1462 70513475
chr15 41702090 41702105 STAT1 JASPAR yes 41700606 1484 70513476
chr15 41702092 41702103 STAT3 JASPAR yes 41700606 1486 70513477
chr15 41702096 41702104 FEV JASPAR yes 41700606 1490 70513478
SNPs associated with RTF1[ENSG00000137815.10], confirmed by eQTL
Back to top
Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 41782684 rs12440045 A C 6923 Esophagus 0.0372973 3917642
chr15 42300302 rs9920197 C T 524541 Esophagus 0.228916 3920325
chr15 41946937 rs112578934 C T 171176 Heart 0.137791 3918632
chr15 42347233 rs79741664 G A 571472 Heart 0.0553522 3920925
chr15 41442195 rs28866311 T G 258411 Pancreas 0.363425 3916538
chr15 41204853 rs75633336 C T 495753 Breast 0.252478 3915091
chr15 42204503 rs78416710 A G 428742 Spleen 0.112442 3919559
chr15 41840706 rs34043726 TA T 64945 Liver 0.401675 3917871
Details of RTF1[ENSG00000137815.10]
Back to top
Genomic Location chr15:41700606-41775761[+]
TSS 41700606
Gene Name RTF1
Ensembl ID ENSG00000137815.10
ENTREZID 23168
Uniprot
Q92541
Protein Name
RNA polymerase-associated protein RTF1 homolog
Expression levels of RTF1[ENSG00000137815.10]
Back to top