Enhancers that regulate UPF3A[ENSG00000169062.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr13 114982925 114994670 enh88080 115047059 52389
chr13 114991757 114991940 vista17214 115047059 55119
chr13 114995132 114995533 vista17215 115047059 51526
chr13 115026345 115036395 enh3029 115047059 10664
chr13 115046177 115046319 vista17216 115047059 740
chr13 115058665 115062870 enh110811 115047059 11606
chr13 115078776 115079079 vista17217 115047059 31717
chr13 115082065 115086215 enh64763 115047059 35006
chr13 115097145 115102035 enh60479 115047059 50086
chr13 115103210 115109107 enh68644 115047059 56151

Transcript facotrs that regulate UPF3A[ENSG00000169062.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr13 115045868 115047881 POLR2A UCSC Txn Factor no Conserved 115047059 822 108092203
chr13 115045897 115046397 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 662 108092204
chr13 115045927 115046263 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 115047059 796 108092205
chr13 115045930 115046384 CTCF UCSC Txn Factor no Conserved 115047059 675 108092206
chr13 115045938 115046314 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 115047059 745 108092207
chr13 115045950 115046386 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 673 108092208
chr13 115045964 115046360 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 699 108092209
chr13 115045972 115046508 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 551 108092210
chr13 115045977 115046241 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 818 108092211
chr13 115045980 115046310 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 115047059 749 108092212
chr13 115045982 115046252 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 115047059 807 108092213
chr13 115045983 115046343 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 716 108092214
chr13 115045984 115046394 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 115047059 665 108092215
chr13 115046003 115046359 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 700 108092216
chr13 115046011 115046375 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 684 108092217
chr13 115046013 115046283 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 776 108092218
chr13 115046013 115046383 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 115047059 676 108092219
chr13 115046015 115046385 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 674 108092220
chr13 115046016 115046240 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 115047059 819 108092221
chr13 115046017 115046277 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 782 108092222
chr13 115046021 115046351 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 708 108092223
chr13 115046021 115046425 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 634 108092224
chr13 115046036 115046266 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 793 108092225
chr13 115046070 115046686 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 115047059 373 108092226
chr13 115046082 115046272 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 115047059 787 108092227
chr13 115046083 115046279 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 780 108092228
chr13 115046088 115046264 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 115047059 795 108092229
chr13 115046098 115046205 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 854 108092230
chr13 115046098 115046478 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 581 108092231
chr13 115046103 115046238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 115047059 821 108092232
chr13 115046104 115046368 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 691 108092233
chr13 115046107 115046406 PAX5 UCSC Txn Factor no Conserved 115047059 653 108092234
chr13 115046119 115046459 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 600 108092235
chr13 115046124 115046754 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 305 108092236
chr13 115046136 115046406 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 653 108092237
chr13 115046145 115046297 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 115047059 762 108092238
chr13 115046145 115046394 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 665 108092239
chr13 115046149 115046653 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 115047059 406 108092240
chr13 115046197 115046206 THAP1 JASPAR yes 115047059 853 19350762
chr13 115046199 115046209 SP1 JASPAR yes 115047059 850 19350763
chr13 115046200 115046204 LFA1 TRANSFAC yes 115047059 855 19350764
chr13 115046221 115046227 ZNF354C JASPAR yes 115047059 832 19350765
chr13 115046252 115046257 SP1 TRANSFAC yes 115047059 802 19350766
chr13 115046271 115046284 EOMES JASPAR yes 115047059 775 19350767
chr13 115046273 115046283 TBR1 JASPAR yes 115047059 776 19350768
chr13 115046273 115046290 PAX1 JASPAR yes 115047059 769 19350769
chr13 115046273 115046290 PAX9 JASPAR yes 115047059 769 19350770
chr13 115046274 115046284 TBX21 JASPAR yes 115047059 775 19350771
chr13 115046274 115046288 PAX6 JASPAR yes 115047059 771 19350772
chr13 115046274 115046293 PAX5 JASPAR yes 115047059 766 19350773
chr13 115046285 115046945 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 115047059 114 108092241
chr13 115046299 115046319 RREB1 JASPAR yes 115047059 740 19350774

Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr13 114995733 rs7332374 T C 51326 Esophagus 2.54764e-05 3416779
chr13 115062235 rs9525316 A C,G 0 Pancreas 0.273212 3417107
chr13 115100834 rs74118710 T C 29551 Ovary 0.247607 3417270
chr13 115059765 rs7320104 A G 0 Liver 0.0527026 3417049
chr13 115014600 rs17338060 T C 32459 Stomach 0.000195104 3416834

Genomic Location chr13:115047059-115071283[+]
TSS 115047059
Gene Name UPF3A
Ensembl ID ENSG00000169062.10
ENTREZID 65110
Uniprot
B3KUE7
Q9H1J1
Protein Name
Regulator of nonsense transcripts 3A
UPF3 regulator of nonsense transcripts homolog A