EnhancerDB
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Enhancers that regulate TMEM50A[ENSG00000183726.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 25560905 25571595 enh151 25664408 92813
Bone Marrow (K562) Blood (Karpas-422)
chr1 25566195 25566411 vista832 25664408 97997
VISTA
chr1 25566618 25566670 vista833 25664408 97738
VISTA
chr1 25574705 25578855 enh11628 25664408 85553
Placenta
chr1 25584365 25588755 enh78982 25664408 75653
Prostate (PC-3)
chr1 25605605 25610515 enh152 25664408 53893
Blood (Karpas-422)
chr1 25617985 25622575 enh153 25664408 41833
Blood (Karpas-422)
chr1 25665993 25666367 vista834 25664408 1585
VISTA
chr1 25723745 25728355 enh154 25664408 59337
Blood (Karpas-422)
chr1 25750025 25754395 enh78983 25664408 85617
Pancreas Prostate (PC-3) Lung (PC-9)
Transcript facotrs that regulate TMEM50A[ENSG00000183726.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 25666000 25666011 FLI1 JASPAR yes 25664408 1592 118253610
chr1 25666001 25666006 ETS2 TRANSFAC yes 25664408 1593 118253611
chr1 25666001 25666009 FEV JASPAR yes 25664408 1593 118253612
chr1 25666009 25666019 GCM2 JASPAR yes 25664408 1601 118253613
chr1 25666009 25666020 GCM1 JASPAR yes 25664408 1601 118253614
chr1 25666057 25666067 TBX21 JASPAR yes 25664408 1649 118253615
chr1 25666057 25666068 TBX20 JASPAR yes 25664408 1649 118253616
chr1 25666057 25666068 TBX2 JASPAR yes 25664408 1649 118253617
chr1 25666057 25666070 EOMES JASPAR yes 25664408 1649 118253618
chr1 25666058 25666066 MGA JASPAR yes 25664408 1650 118253619
chr1 25666058 25666066 TBX15 JASPAR yes 25664408 1650 118253620
chr1 25666058 25666066 TBX1 JASPAR yes 25664408 1650 118253621
chr1 25666058 25666066 TBX4 JASPAR yes 25664408 1650 118253622
chr1 25666058 25666066 TBX5 JASPAR yes 25664408 1650 118253623
chr1 25666058 25666068 TBR1 JASPAR yes 25664408 1650 118253624
chr1 25666068 25666074 HiNF-A TRANSFAC yes 25664408 1660 118253625
chr1 25666081 25666097 POU4F2 JASPAR yes 25664408 1673 118253626
chr1 25666081 25666097 POU4F3 JASPAR yes 25664408 1673 118253627
chr1 25666083 25666097 POU4F1 JASPAR yes 25664408 1675 118253628
chr1 25666088 25666100 POU2F1 JASPAR yes 25664408 1680 118253629
chr1 25666088 25666101 POU3F3 JASPAR yes 25664408 1680 118253630
chr1 25666088 25666102 POU1F1 JASPAR yes 25664408 1680 118253631
chr1 25666089 25666101 POU3F1 JASPAR yes 25664408 1681 118253632
chr1 25666089 25666101 POU3F2 JASPAR yes 25664408 1681 118253633
chr1 25666089 25666102 POU2F2 JASPAR yes 25664408 1681 118253634
chr1 25666090 25666098 FOXL1 JASPAR yes 25664408 1682 118253635
chr1 25666090 25666099 POU3F4 JASPAR yes 25664408 1682 118253636
chr1 25666090 25666099 POU5F1B JASPAR yes 25664408 1682 118253637
chr1 25666090 25666101 FOXB1 JASPAR yes 25664408 1682 118253638
chr1 25666106 25666119 POU2F2 JASPAR yes 25664408 1698 118253639
chr1 25666107 25666111 YY1 TRANSFAC yes 25664408 1699 118253640
chr1 25666112 25666126 POU1F1 JASPAR yes 25664408 1704 118253641
chr1 25666114 25666118 YY1 TRANSFAC yes 25664408 1706 118253642
chr1 25666136 25666151 HNF4G JASPAR yes 25664408 1728 118253643
chr1 25666137 25666151 NR2F1 JASPAR yes 25664408 1729 118253644
chr1 25666137 25666152 HNF4A JASPAR yes 25664408 1729 118253645
chr1 25666165 25666180 SOX21 JASPAR yes 25664408 1757 118253646
chr1 25666184 25666199 FOXA1 JASPAR yes 25664408 1776 118253647
chr1 25666185 25666196 FOXB1 JASPAR yes 25664408 1777 118253648
chr1 25666185 25666196 FOXC1 JASPAR yes 25664408 1777 118253649
chr1 25666197 25666208 PROP1 JASPAR yes 25664408 1789 118253650
chr1 25666202 25666206 YY1 TRANSFAC yes 25664408 1794 118253651
chr1 25666224 25666235 DMRT3 JASPAR yes 25664408 1816 118253652
chr1 25666243 25666254 FOXH1 JASPAR yes 25664408 1835 118253653
chr1 25666244 25666250 ZNF354C JASPAR yes 25664408 1836 118253654
chr1 25666244 25666254 GSC2 JASPAR yes 25664408 1836 118253655
chr1 25666244 25666254 GSC JASPAR yes 25664408 1836 118253656
chr1 25666245 25666254 PITX3 JASPAR yes 25664408 1837 118253657
chr1 25666247 25666265 MAFF JASPAR yes 25664408 1839 118253658
chr1 25666284 25666295 PHOX2A JASPAR yes 25664408 1876 118253659
chr1 25666284 25666295 PROP1 JASPAR yes 25664408 1876 118253660
chr1 25666340 25666344 ESR1 TRANSFAC yes 25664408 1932 118253661
chr1 25666341 25666353 HNF1B JASPAR yes 25664408 1933 118253662
chr1 25666348 25666358 HMBOX1 JASPAR yes 25664408 1940 118253663
chr1 25666348 25666359 HOXC12 JASPAR yes 25664408 1940 118253664
SNPs associated with TMEM50A[ENSG00000183726.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 26397199 rs3008227 G A 708347 Esophagus 0.138237 178046
chr1 25561667 rs55794721 G A 102741 Esophagus 9.86691e-05 172413
chr1 25757996 rs909834 A G 69144 Esophagus 0.00184596 173017
chr1 25561667 rs55794721 G A 102741 Heart 2.32059e-17 172413
chr1 26002585 rs2982316 G A 313733 Pancreas 0.0705213 175055
chr1 26354743 rs2736833 T C 665891 Breast 0.380634 177901
chr1 25586488 rs28651843 T C 77920 Ovary 0.00247318 172637
chr1 24718318 rs397698281 T TA 946090 Liver 0.15165 165321
Details of TMEM50A[ENSG00000183726.6]
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Genomic Location chr1:25664408-25688852[+]
TSS 25664408
Gene Name TMEM50A
Ensembl ID ENSG00000183726.6
ENTREZID 23585
Uniprot
B7Z5M7
Q7RU07
O95807
Protein Name
Cervical cancer oncogene 9
Transmembrane protein 50A
Expression levels of TMEM50A[ENSG00000183726.6]
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