EnhancerDB
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  3. vista27580[chr18:55879509-55879884]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27580[chr18:55879509-55879884]
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Tissue distribution of vista27580
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Transcription factor that possibly regulate vista27580[chr18:55879509-55879884]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 55879732 55879861 EBF1 UCSC Txn Factor no Conserved 108338142
chr18 55879531 55879541 HOXA13 JASPAR yes 42714059
chr18 55879531 55879541 HOXD13 JASPAR yes 42714060
chr18 55879531 55879541 HOXA13 JASPAR yes 110927377
chr18 55879531 55879541 HOXD13 JASPAR yes 110927378
chr18 55879554 55879558 LFA1 TRANSFAC yes 42714061
chr18 55879554 55879558 LFA1 TRANSFAC yes 110927379
chr18 55879566 55879571 ETS2 TRANSFAC yes 42714062
chr18 55879566 55879571 ETS2 TRANSFAC yes 110927380
chr18 55879596 55879601 TFAP2A TRANSFAC yes 42714063
chr18 55879596 55879601 TFAP2A TRANSFAC yes 110927381
chr18 55879596 55879602 MZF1 JASPAR yes 42714064
chr18 55879596 55879602 MZF1 JASPAR yes 110927382
chr18 55879617 55879638 ZNF263 JASPAR yes 42714065
chr18 55879617 55879638 ZNF263 JASPAR yes 110927383
chr18 55879630 55879645 HNF4G JASPAR yes 42714066
chr18 55879630 55879645 HNF4G JASPAR yes 110927384
chr18 55879631 55879645 NR2F1 JASPAR yes 42714067
chr18 55879631 55879645 NR2F1 JASPAR yes 110927385
chr18 55879631 55879646 HNF4A JASPAR yes 42714068
chr18 55879631 55879646 HNF4A JASPAR yes 110927386
chr18 55879653 55879666 SMAD2 JASPAR yes 42714069
chr18 55879653 55879666 SMAD2 JASPAR yes 110927387
chr18 55879678 55879691 NFKB1 JASPAR yes 42714070
chr18 55879678 55879691 NFKB2 JASPAR yes 42714071
chr18 55879678 55879691 NFKB1 JASPAR yes 110927388
chr18 55879678 55879691 NFKB2 JASPAR yes 110927389
chr18 55879679 55879690 NFKB1 JASPAR yes 42714072
chr18 55879679 55879690 NFKB1 JASPAR yes 110927390
chr18 55879679 55879692 NFKB1 JASPAR yes 42714073
chr18 55879679 55879692 NFKB2 JASPAR yes 42714074
chr18 55879679 55879692 NFKB1 JASPAR yes 110927391
chr18 55879679 55879692 NFKB2 JASPAR yes 110927392
chr18 55879680 55879690 NFKB1 JASPAR yes 42714075
chr18 55879680 55879690 RELA JASPAR yes 42714076
chr18 55879680 55879690 NFKB1 JASPAR yes 110927393
chr18 55879680 55879690 RELA JASPAR yes 110927394
chr18 55879680 55879691 NFKB1 JASPAR yes 42714077
chr18 55879680 55879691 NFKB1 JASPAR yes 110927395
chr18 55879681 55879691 NFKB1 JASPAR yes 42714078
chr18 55879681 55879691 REL JASPAR yes 42714079
chr18 55879681 55879691 NFKB1 JASPAR yes 110927396
chr18 55879681 55879691 REL JASPAR yes 110927397
chr18 55879693 55879697 TEAD2 TRANSFAC yes 42714080
chr18 55879693 55879697 TEAD2 TRANSFAC yes 110927398
chr18 55879695 55879698 MYB TRANSFAC yes 42714081
chr18 55879695 55879698 MYB TRANSFAC yes 110927399
chr18 55879704 55879715 USF1 JASPAR yes 42714082
chr18 55879704 55879715 USF2 JASPAR yes 42714083
chr18 55879704 55879715 USF1 JASPAR yes 110927400
chr18 55879704 55879715 USF2 JASPAR yes 110927401
chr18 55879705 55879715 TFEC JASPAR yes 42714084
chr18 55879705 55879715 TFEC JASPAR yes 110927402
chr18 55879725 55879729 NFE TRANSFAC yes 42714085
chr18 55879725 55879729 NFE TRANSFAC yes 110927403
chr18 55879760 55879773 DUXA JASPAR yes 42714086
chr18 55879760 55879773 DUXA JASPAR yes 110927404
chr18 55879761 55879772 DUX4 JASPAR yes 42714087
chr18 55879761 55879772 DUX4 JASPAR yes 110927405
chr18 55879770 55879784 GLIS3 JASPAR yes 42714088
chr18 55879770 55879784 ZIC1 JASPAR yes 42714089
chr18 55879770 55879784 GLIS3 JASPAR yes 110927406
chr18 55879770 55879784 ZIC1 JASPAR yes 110927407
chr18 55879770 55879785 ZIC3 JASPAR yes 42714090
chr18 55879770 55879785 ZIC4 JASPAR yes 42714091
chr18 55879770 55879785 ZIC3 JASPAR yes 110927408
chr18 55879770 55879785 ZIC4 JASPAR yes 110927409
chr18 55879782 55879786 H4TF2 TRANSFAC yes 42714092
chr18 55879782 55879786 H4TF2 TRANSFAC yes 110927410
chr18 55879793 55879803 MAX JASPAR yes 42714093
chr18 55879793 55879803 MAX JASPAR yes 110927411
chr18 55879793 55879805 HES5 JASPAR yes 42714094
chr18 55879793 55879805 HES7 JASPAR yes 42714095
chr18 55879793 55879805 HES5 JASPAR yes 110927412
chr18 55879793 55879805 HES7 JASPAR yes 110927413
chr18 55879794 55879804 CLOCK JASPAR yes 42714096
chr18 55879794 55879804 HEY1 JASPAR yes 42714097
chr18 55879794 55879804 HEY2 JASPAR yes 42714098
chr18 55879794 55879804 MAX JASPAR yes 42714099
chr18 55879794 55879804 MNT JASPAR yes 42714100
chr18 55879794 55879804 CLOCK JASPAR yes 110927414
chr18 55879794 55879804 HEY1 JASPAR yes 110927415
chr18 55879794 55879804 HEY2 JASPAR yes 110927416
chr18 55879794 55879804 MAX JASPAR yes 110927417
chr18 55879794 55879804 MNT JASPAR yes 110927418
chr18 55879796 55879801 MYC TRANSFAC yes 42714101
chr18 55879796 55879801 USF1 TRANSFAC yes 42714102
chr18 55879796 55879801 USF2 TRANSFAC yes 42714103
chr18 55879796 55879801 MYC TRANSFAC yes 110927419
chr18 55879796 55879801 USF1 TRANSFAC yes 110927420
chr18 55879796 55879801 USF2 TRANSFAC yes 110927421
chr18 55879796 55879803 USF1 JASPAR yes 42714104
chr18 55879796 55879803 USF1 JASPAR yes 110927422
chr18 55879800 55879805 TFAP2A TRANSFAC yes 42714105
chr18 55879800 55879805 TFAP2A TRANSFAC yes 110927423
chr18 55879800 55879806 MZF1 JASPAR yes 42714106
chr18 55879800 55879806 MZF1 JASPAR yes 110927424
chr18 55879801 55879811 GSC2 JASPAR yes 42714107
chr18 55879801 55879811 GSC JASPAR yes 42714108
chr18 55879801 55879811 GSC2 JASPAR yes 110927425
chr18 55879801 55879811 GSC JASPAR yes 110927426
chr18 55879802 55879810 RHOXF1 JASPAR yes 42714109
chr18 55879802 55879810 RHOXF1 JASPAR yes 110927427
chr18 55879802 55879811 PITX3 JASPAR yes 42714110
chr18 55879802 55879811 PITX3 JASPAR yes 110927428
chr18 55879812 55879830 ESR2 JASPAR yes 42714111
chr18 55879812 55879830 ESR2 JASPAR yes 110927429
chr18 55879818 55879828 TBX21 JASPAR yes 42714112
chr18 55879818 55879828 TBX21 JASPAR yes 110927430
chr18 55879823 55879836 POU2F2 JASPAR yes 42714113
chr18 55879823 55879836 POU2F2 JASPAR yes 110927431
chr18 55879826 55879833 POU2F1 TRANSFAC yes 42714114
chr18 55879826 55879833 POU2F2C TRANSFAC yes 42714115
chr18 55879826 55879833 POU2F2 TRANSFAC yes 42714116
chr18 55879826 55879833 POU2F1 TRANSFAC yes 110927432
chr18 55879826 55879833 POU2F2C TRANSFAC yes 110927433
chr18 55879826 55879833 POU2F2 TRANSFAC yes 110927434
chr18 55879826 55879835 POU3F4 JASPAR yes 42714117
chr18 55879826 55879835 POU5F1B JASPAR yes 42714118
chr18 55879826 55879835 POU3F4 JASPAR yes 110927435
chr18 55879826 55879835 POU5F1B JASPAR yes 110927436
chr18 55879833 55879838 TFAP2A TRANSFAC yes 42714119
chr18 55879833 55879838 TFAP2A TRANSFAC yes 110927437
chr18 55879833 55879839 MZF1 JASPAR yes 42714120
chr18 55879833 55879839 MZF1 JASPAR yes 110927438
chr18 55879873 55879877 H1TF2 TRANSFAC yes 42714121
chr18 55879873 55879877 NFE TRANSFAC yes 42714122
chr18 55879873 55879877 SRF TRANSFAC yes 42714123
chr18 55879873 55879877 H1TF2 TRANSFAC yes 110927439
chr18 55879873 55879877 NFE TRANSFAC yes 110927440
chr18 55879873 55879877 SRF TRANSFAC yes 110927441
SNP sites on vista27580[chr18:55879509-55879884]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 55879611 rs551232 G A no 5282703
chr18 55879679 rs550451 A G
NFKB1 NFKB2
5282704
chr18 55879719 rs35192183 TA T no 5282705
chr18 55879719 rs397858268 TA T no 5282706
chr18 55879778 rs549472 C T
EBF1 GLIS3 ZIC1 ZIC3 ZIC4
5282707
chr18 55879875 rs526652 C T
H1TF2 NFE SRF
5282708
Genes possibly regulated by vista27580[chr18:55879509-55879884]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista27580[chr18:55879509-55879884]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results