EnhancerDB
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Enhancers that have rs550451[chr18:55879679]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55867165 55894619 enh32734
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Heart
chr18 55879509 55879884 vista27580
VISTA
Transcript factors that have rs550451[chr18:55879679]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55879384 55879749 ZBTB33 GTRD no Brain (SK-N-SH) 21824032
chr18 55879384 55879749 ZBTB33 GTRD no Brain (SK-N-SH) 108338139
chr18 55879612 55879942 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338140
chr18 55879651 55879971 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338141
chr18 55879678 55879691 NFKB1 JASPAR yes 42714070
chr18 55879678 55879691 NFKB2 JASPAR yes 42714071
chr18 55879678 55879691 NFKB1 JASPAR yes 110927388
chr18 55879678 55879691 NFKB2 JASPAR yes 110927389
chr18 55879679 55879690 NFKB1 JASPAR yes 42714072
chr18 55879679 55879690 NFKB1 JASPAR yes 110927390
chr18 55879679 55879692 NFKB1 JASPAR yes 42714073
chr18 55879679 55879692 NFKB2 JASPAR yes 42714074
chr18 55879679 55879692 NFKB1 JASPAR yes 110927391
chr18 55879679 55879692 NFKB2 JASPAR yes 110927392
Genes associated with rs550451[chr18:55879679], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More