EnhancerDB
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Enhancers that have rs549472[chr18:55879778]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55867165 55894619 enh32734
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Heart
chr18 55879509 55879884 vista27580
VISTA
Transcript factors that have rs549472[chr18:55879778]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55879612 55879942 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338140
chr18 55879651 55879971 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338141
chr18 55879732 55879861 EBF1 UCSC Txn Factor no Conserved 108338142
chr18 55879732 55879861 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338143
chr18 55879770 55879784 GLIS3 JASPAR yes 42714088
chr18 55879770 55879784 ZIC1 JASPAR yes 42714089
chr18 55879770 55879784 GLIS3 JASPAR yes 110927406
chr18 55879770 55879784 ZIC1 JASPAR yes 110927407
chr18 55879770 55879785 ZIC3 JASPAR yes 42714090
chr18 55879770 55879785 ZIC4 JASPAR yes 42714091
chr18 55879770 55879785 ZIC3 JASPAR yes 110927408
chr18 55879770 55879785 ZIC4 JASPAR yes 110927409
Genes associated with rs549472[chr18:55879778], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More