EnhancerDB
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  3. vista28087[chr19:488227-488667]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28087[chr19:488227-488667]
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Tissue distribution of vista28087
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Transcription factor that possibly regulate vista28087[chr19:488227-488667]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 488385 489720 POLR2A UCSC Txn Factor no Conserved 108343956
chr19 488442 489117 PHF8 UCSC Txn Factor no Conserved 108344018
chr19 488289 488294 SP1 TRANSFAC yes 70776081
chr19 488290 488295 SP1 TRANSFAC yes 70776082
chr19 488290 488299 THAP1 JASPAR yes 70776083
chr19 488293 488297 LFA1 TRANSFAC yes 70776084
chr19 488302 488315 NR2F1 JASPAR yes 70776085
chr19 488306 488310 ESR1 TRANSFAC yes 70776086
chr19 488332 488335 MYB TRANSFAC yes 70776087
chr19 488337 488350 NFKB1 JASPAR yes 70776088
chr19 488337 488350 NFKB2 JASPAR yes 70776089
chr19 488353 488368 MEF2C JASPAR yes 70776090
chr19 488354 488369 MEF2A JASPAR yes 70776091
chr19 488355 488367 MEF2A JASPAR yes 70776092
chr19 488355 488367 MEF2B JASPAR yes 70776093
chr19 488355 488367 MEF2D JASPAR yes 70776094
chr19 488360 488371 FOXA1 JASPAR yes 70776095
chr19 488361 488373 FOXC2 JASPAR yes 70776096
chr19 488362 488374 FOXI1 JASPAR yes 70776097
chr19 488367 488376 VENTX JASPAR yes 70776098
chr19 488367 488377 EN2 JASPAR yes 70776099
chr19 488367 488377 ESX1 JASPAR yes 70776100
chr19 488367 488377 GBX2 JASPAR yes 70776101
chr19 488368 488376 BARX1 JASPAR yes 70776102
chr19 488377 488387 SP1 JASPAR yes 70776103
chr19 488415 488436 ZNF263 JASPAR yes 70776104
chr19 488433 488443 SREBF2 JASPAR yes 70776105
chr19 488447 488457 SP1 JASPAR yes 70776106
chr19 488449 488454 SP1 TRANSFAC yes 70776107
chr19 488458 488467 RUNX2 JASPAR yes 70776108
chr19 488469 488481 YY1 JASPAR yes 70776109
chr19 488472 488478 YY1 JASPAR yes 70776110
chr19 488472 488484 E2F1 JASPAR yes 70776111
chr19 488494 488513 PAX5 JASPAR yes 70776112
chr19 488528 488531 MYB TRANSFAC yes 70776113
chr19 488551 488554 MYB TRANSFAC yes 70776114
chr19 488567 488582 ZBTB33 JASPAR yes 70776115
chr19 488585 488590 ATF1 TRANSFAC yes 70776116
chr19 488585 488598 ELF3 JASPAR yes 70776117
chr19 488585 488602 RXRA JASPAR yes 70776118
chr19 488586 488597 SPDEF JASPAR yes 70776119
chr19 488586 488598 EHF JASPAR yes 70776120
chr19 488586 488598 ELF4 JASPAR yes 70776121
chr19 488599 488619 RREB1 JASPAR yes 70776122
chr19 488613 488630 RARA JASPAR yes 70776123
chr19 488613 488630 RXRA JASPAR yes 70776124
chr19 488616 488636 ESR1 JASPAR yes 70776125
chr19 488619 488637 ESR1 JASPAR yes 70776126
chr19 488620 488633 NR2F1 JASPAR yes 70776127
chr19 488620 488637 ESR1 JASPAR yes 70776128
chr19 488621 488636 ESR2 JASPAR yes 70776129
chr19 488622 488633 ESRRA JASPAR yes 70776130
chr19 488643 488653 ELK1 JASPAR yes 70776131
chr19 488645 488654 ELK4 JASPAR yes 70776132
chr19 488645 488655 ELK1 JASPAR yes 70776133
chr19 488645 488655 ELK3 JASPAR yes 70776134
chr19 488645 488655 ERG JASPAR yes 70776135
chr19 488645 488655 ETS1 JASPAR yes 70776136
chr19 488645 488655 ETV1 JASPAR yes 70776137
chr19 488645 488655 ETV5 JASPAR yes 70776138
chr19 488645 488655 FLI1 JASPAR yes 70776139
chr19 488645 488655 GABPA JASPAR yes 70776140
chr19 488645 488656 ELK4 JASPAR yes 70776141
chr19 488647 488653 ETS1 JASPAR yes 70776142
chr19 488647 488653 SPI1 JASPAR yes 70776143
SNP sites on vista28087[chr19:488227-488667]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 488230 rs551238946 C CA no 5364275
chr19 488258 rs78203739 G A,C no 5364276
chr19 488269 rs550090206 T C no 5364277
chr19 488276 rs112071421 T C no 5364278
chr19 488293 rs146603263 C T
LFA1 SP1 THAP1
5364279
chr19 488364 rs201427478 TACAA T
FOXA1 FOXC2 FOXI1 MEF2A MEF2B MEF2C MEF2D
5364280
chr19 488390 rs370381170 C T
POLR2A
5364281
chr19 488391 rs111692538 A G
POLR2A
5364282
chr19 488396 rs562828968 C T
POLR2A
5364283
chr19 488413 rs548762467 T A
POLR2A
5364284
chr19 488415 rs566991704 G A
POLR2A ZNF263
5364285
chr19 488470 rs10414529 C G
PHF8 POLR2A YY1
5364286
chr19 488474 rs143898391 A T
E2F1 PHF8 POLR2A YY1
5364287
chr19 488476 rs3999751 G C
E2F1 PHF8 POLR2A YY1
5364288
chr19 488506 rs10424907 A G
PAX5 PHF8 POLR2A
5364289
chr19 488509 rs575587728 G A,T
PAX5 PHF8 POLR2A
5364290
chr19 488607 rs1574520 G A
PHF8 POLR2A RREB1
5364291
chr19 488623 rs150429875 G A,T
ESR1 ESR2 ESRRA NR2F1 PHF8 POLR2A RARA RXRA
5364292
chr19 488633 rs113553206 A AC
ESR1 ESR2 ESRRA NR2F1 PHF8 POLR2A
5364293
chr19 488633 rs34816962 A AC
ESR1 ESR2 ESRRA NR2F1 PHF8 POLR2A
5364294
chr19 488640 rs34388402 A G
PHF8 POLR2A
5364295
Genes possibly regulated by vista28087[chr19:488227-488667]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 405438 409139 - C2CD4C ENSG00000183186.6 409139 0.8 1.0 16700 20912
chr19 416583 460996 - SHC2 ENSG00000129946.6 460996 0.87 1.0 16701 72769
chr19 463346 474983 - ODF3L2 ENSG00000181781.5 474983 0.86 1.0 16702 86756
chr19 489176 505347 + MADCAM1 ENSG00000099866.10 489176 0.8 0.87 16703 99491
chr19 507299 519654 + TPGS1 ENSG00000141933.8 507299 0.64 1.0 16704 81368
chr19 531714 542097 + CDC34 ENSG00000099804.4 531714 0.52 1.0 16705 56953
chr19 544034 549919 + GZMM ENSG00000197540.3 544034 0.95 1.0 16706 44633
chr19 571297 583493 + BSG ENSG00000172270.14 571297 0.64 1.0 16707 17370
Expression level of Genes
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miRNAs possibly regulated by vista28087[chr19:488227-488667]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results