EnhancerDB
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  3. vista28388[chr19:5338459-5338816]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28388[chr19:5338459-5338816]
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Tissue distribution of vista28388
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Transcription factor that possibly regulate vista28388[chr19:5338459-5338816]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 5338757 5339181 CTCF UCSC Txn Factor no Conserved 108375075
chr19 5338499 5338505 ETS1 JASPAR yes 70792131
chr19 5338499 5338505 SPI1 JASPAR yes 70792132
chr19 5338505 5338521 GLIS1 JASPAR yes 70792133
chr19 5338506 5338512 SOX10 JASPAR yes 70792134
chr19 5338506 5338520 GLIS3 JASPAR yes 70792135
chr19 5338509 5338530 ZNF263 JASPAR yes 70792136
chr19 5338513 5338527 PLAG1 JASPAR yes 70792137
chr19 5338513 5338534 ZNF263 JASPAR yes 70792138
chr19 5338514 5338531 RXRA JASPAR yes 70792139
chr19 5338514 5338535 ZNF263 JASPAR yes 70792140
chr19 5338515 5338519 LFA1 TRANSFAC yes 70792141
chr19 5338515 5338530 ZIC3 JASPAR yes 70792142
chr19 5338515 5338530 ZIC4 JASPAR yes 70792143
chr19 5338515 5338535 RREB1 JASPAR yes 70792144
chr19 5338516 5338530 ZIC1 JASPAR yes 70792145
chr19 5338520 5338530 SP1 JASPAR yes 70792146
chr19 5338520 5338530 ZNF740 JASPAR yes 70792147
chr19 5338522 5338536 PLAG1 JASPAR yes 70792148
chr19 5338532 5338538 MAZ TRANSFAC yes 70792149
chr19 5338539 5338548 HIC2 JASPAR yes 70792150
chr19 5338542 5338552 TCF4 JASPAR yes 70792151
chr19 5338544 5338553 ZEB1 JASPAR yes 70792152
chr19 5338546 5338551 SP1 TRANSFAC yes 70792153
chr19 5338548 5338553 TFAP2A TRANSFAC yes 70792154
chr19 5338548 5338554 MZF1 JASPAR yes 70792155
chr19 5338565 5338579 GLIS2 JASPAR yes 70792156
chr19 5338572 5338586 PLAG1 JASPAR yes 70792157
chr19 5338573 5338588 RUNX2 JASPAR yes 70792158
chr19 5338590 5338596 SP1 TRANSFAC yes 70792159
chr19 5338590 5338601 E2F1 JASPAR yes 70792160
chr19 5338591 5338596 SP1 TRANSFAC yes 70792161
chr19 5338591 5338602 E2F4 JASPAR yes 70792162
chr19 5338591 5338602 E2F6 JASPAR yes 70792163
chr19 5338592 5338597 SP1 TRANSFAC yes 70792164
chr19 5338595 5338600 ETS2 TRANSFAC yes 70792165
chr19 5338604 5338609 SP1 TRANSFAC yes 70792166
chr19 5338604 5338610 SP1 TRANSFAC yes 70792167
chr19 5338604 5338611 SP1 TRANSFAC yes 70792168
chr19 5338605 5338617 INSM1 JASPAR yes 70792169
chr19 5338609 5338617 SP1 TRANSFAC yes 70792170
chr19 5338613 5338632 PAX5 JASPAR yes 70792171
chr19 5338614 5338626 NHLH1 JASPAR yes 70792172
chr19 5338615 5338625 NHLH1 JASPAR yes 70792173
chr19 5338634 5338642 E2F1 JASPAR yes 70792174
chr19 5338644 5338654 TFAP4 JASPAR yes 70792175
chr19 5338654 5338675 ZNF263 JASPAR yes 70792176
chr19 5338689 5338694 NFY TRANSFAC yes 70792177
chr19 5338691 5338697 NFIC JASPAR yes 70792178
chr19 5338692 5338704 INSM1 JASPAR yes 70792179
chr19 5338697 5338706 SP1 TRANSFAC yes 70792180
chr19 5338697 5338707 SP1 JASPAR yes 70792181
chr19 5338697 5338718 ZNF263 JASPAR yes 70792182
chr19 5338698 5338708 SP1 JASPAR yes 70792183
chr19 5338699 5338705 MAZ TRANSFAC yes 70792184
chr19 5338699 5338709 SP1 JASPAR yes 70792185
chr19 5338706 5338710 LFA1 TRANSFAC yes 70792186
chr19 5338710 5338716 SOX10 JASPAR yes 70792187
chr19 5338713 5338718 ETS2 TRANSFAC yes 70792188
chr19 5338713 5338721 EHF JASPAR yes 70792189
chr19 5338725 5338735 SP1 JASPAR yes 70792190
chr19 5338727 5338733 MAZ TRANSFAC yes 70792191
chr19 5338728 5338738 MZF1 JASPAR yes 70792192
chr19 5338731 5338740 SP1 TRANSFAC yes 70792193
chr19 5338731 5338741 SP1 JASPAR yes 70792194
chr19 5338732 5338741 SP1 TRANSFAC yes 70792195
chr19 5338733 5338739 MAZ TRANSFAC yes 70792196
chr19 5338742 5338754 POU2F1 JASPAR yes 70792197
chr19 5338742 5338755 POU3F3 JASPAR yes 70792198
chr19 5338742 5338756 POU1F1 JASPAR yes 70792199
chr19 5338743 5338755 POU3F1 JASPAR yes 70792200
chr19 5338743 5338755 POU3F2 JASPAR yes 70792201
chr19 5338743 5338756 POU2F2 JASPAR yes 70792202
chr19 5338744 5338752 POU2F1 TRANSFAC yes 70792203
chr19 5338744 5338753 POU3F4 JASPAR yes 70792204
chr19 5338744 5338753 POU5F1B JASPAR yes 70792205
chr19 5338745 5338752 POU2F1 TRANSFAC yes 70792206
chr19 5338745 5338752 POU2F2 TRANSFAC yes 70792207
chr19 5338776 5338788 MEF2A JASPAR yes 70792208
chr19 5338776 5338788 MEF2B JASPAR yes 70792209
chr19 5338776 5338788 MEF2D JASPAR yes 70792210
chr19 5338778 5338782 YY1 TRANSFAC yes 70792211
chr19 5338782 5338792 BARHL2 JASPAR yes 70792212
chr19 5338793 5338805 NHLH1 JASPAR yes 70792213
chr19 5338794 5338804 NHLH1 JASPAR yes 70792214
SNP sites on vista28388[chr19:5338459-5338816]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 5338524 rs566676343 G C,T
PLAG1 RREB1 RXRA SP1 ZIC1 ZIC3 ZIC4 ZNF263 ZNF740
5408701
chr19 5338529 rs8106914 G A,T
PLAG1 RREB1 RXRA SP1 ZIC1 ZIC3 ZIC4 ZNF263 ZNF740
5408702
chr19 5338540 rs552292800 A G
HIC2
5408703
chr19 5338713 rs79622411 A C
EHF ETS2 SOX10 ZNF263
5408704
chr19 5338738 rs534244906 G A
MAZ MZF1 SP1
5408705
chr19 5338756 rs73532996 C A
POU1F1 POU2F2
5408706
chr19 5338805 rs117378260 G C,T
CTCF NHLH1
5408707
chr19 5338811 rs80125132 A C
CTCF
5408708
chr19 5338812 rs12984779 T C
CTCF
5408709
Genes possibly regulated by vista28388[chr19:5338459-5338816]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 5158506 5340814 - PTPRS ENSG00000105426.10 5340814 0.7 1.0 16857 98002
Expression level of Genes
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miRNAs possibly regulated by vista28388[chr19:5338459-5338816]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results