EnhancerDB
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  3. rs552292800[chr19:5338540]
Enhancers that have rs552292800[chr19:5338540]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 5338459 5338816 vista28388
VISTA
Transcript factors that have rs552292800[chr19:5338540]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 5337703 5339208 ZNF274 GTRD no Blood (GM12878) 108375041
chr19 5337796 5339271 ZNF274 GTRD no Blood (GM12878) 108375042
chr19 5337917 5339393 TCF7L2 GTRD no Colon (HCT116) 108375043
chr19 5337918 5339304 TCF7L2 GTRD no Colon (HCT116) 108375044
chr19 5337953 5341628 ZNF274 GTRD no Bone Marrow (K562) 108375046
chr19 5337953 5341628 ZNF274 GTRD no Bone Marrow (K562) 108375047
chr19 5337974 5341515 TCF7L2 GTRD no Colon (HCT116) 108375048
chr19 5337974 5341515 TCF7L2 GTRD no Colon (HCT116) 108375049
chr19 5338055 5339226 TCF7L2 GTRD no Colon (HCT116) 108375050
chr19 5338089 5341363 TCF7L2 GTRD no Colon (HCT116) 108375051
chr19 5338089 5341363 TCF7L2 GTRD no Colon (HCT116) 108375052
chr19 5338123 5339554 ZNF274 GTRD no Blood (GM12878) 108375053
chr19 5338123 5339554 ZNF274 GTRD no Blood (GM12878) 108375054
chr19 5338354 5341561 TCF7L2 GTRD no Colon (HCT116) 108375055
chr19 5338354 5341561 TCF7L2 GTRD no Colon (HCT116) 108375056
chr19 5338435 5339126 ZNF274 GTRD no Blood (GM12878) 108375057
chr19 5338472 5339351 ZNF143 GTRD no Epithelial (MCF-7) 108375058
chr19 5338511 5339459 ZNF274 GTRD no Bone Marrow (K562) 108375059
chr19 5338539 5338548 HIC2 JASPAR yes 70792150
Genes associated with rs552292800[chr19:5338540], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More