EnhancerDB
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  3. vista28439[chr19:6539979-6540238]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28439[chr19:6539979-6540238]
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Tissue distribution of vista28439
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Transcription factor that possibly regulate vista28439[chr19:6539979-6540238]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 6533744 6540314 POLR2A UCSC Txn Factor no Conserved 108378505
chr19 6539978 6539993 FOXP1 JASPAR yes 70794756
chr19 6539978 6539993 FOXP1 JASPAR yes 112274266
chr19 6539979 6539994 FOXP1 JASPAR yes 70794757
chr19 6539979 6539994 FOXP1 JASPAR yes 112274267
chr19 6539980 6539995 FOXP1 JASPAR yes 70794758
chr19 6539980 6539995 FOXP1 JASPAR yes 112274268
chr19 6539980 6540001 IRF1 JASPAR yes 70794759
chr19 6539980 6540001 IRF1 JASPAR yes 112274269
chr19 6539981 6539996 FOXP1 JASPAR yes 70794760
chr19 6539981 6539996 FOXP1 JASPAR yes 112274270
chr19 6539981 6540002 IRF1 JASPAR yes 70794761
chr19 6539981 6540002 IRF1 JASPAR yes 112274271
chr19 6539982 6539997 FOXP1 JASPAR yes 70794762
chr19 6539982 6539997 FOXP1 JASPAR yes 112274272
chr19 6539982 6540003 IRF1 JASPAR yes 70794763
chr19 6539982 6540003 IRF1 JASPAR yes 112274273
chr19 6539983 6539998 FOXP1 JASPAR yes 70794764
chr19 6539983 6539998 FOXP1 JASPAR yes 112274274
chr19 6539983 6540004 IRF1 JASPAR yes 70794765
chr19 6539983 6540004 IRF1 JASPAR yes 112274275
chr19 6539984 6539999 FOXP1 JASPAR yes 70794766
chr19 6539984 6539999 FOXP1 JASPAR yes 112274276
chr19 6539984 6540005 IRF1 JASPAR yes 70794767
chr19 6539984 6540005 IRF1 JASPAR yes 112274277
chr19 6539985 6540000 FOXP1 JASPAR yes 70794768
chr19 6539985 6540000 FOXP1 JASPAR yes 112274278
chr19 6539985 6540006 IRF1 JASPAR yes 70794769
chr19 6539985 6540006 IRF1 JASPAR yes 112274279
chr19 6539986 6540001 FOXP1 JASPAR yes 70794770
chr19 6539986 6540001 FOXP1 JASPAR yes 112274280
chr19 6539986 6540007 IRF1 JASPAR yes 70794771
chr19 6539986 6540007 IRF1 JASPAR yes 112274281
chr19 6539987 6540002 FOXP1 JASPAR yes 70794772
chr19 6539987 6540002 FOXP1 JASPAR yes 112274282
chr19 6539987 6540008 IRF1 JASPAR yes 70794773
chr19 6539987 6540008 IRF1 JASPAR yes 112274283
chr19 6539988 6540003 FOXP1 JASPAR yes 70794774
chr19 6539988 6540003 FOXP1 JASPAR yes 112274284
chr19 6539989 6540004 FOXP1 JASPAR yes 70794775
chr19 6539989 6540004 FOXP1 JASPAR yes 112274285
chr19 6539992 6540013 IRF1 JASPAR yes 70794776
chr19 6539992 6540013 IRF1 JASPAR yes 112274286
chr19 6539996 6540010 STAT1 JASPAR yes 70794777
chr19 6539996 6540010 STAT1 JASPAR yes 112274287
chr19 6539996 6540011 PRDM1 JASPAR yes 70794778
chr19 6539996 6540011 PRDM1 JASPAR yes 112274288
chr19 6540000 6540005 ETS2 TRANSFAC yes 70794779
chr19 6540000 6540005 ETS2 TRANSFAC yes 112274289
chr19 6540072 6540085 ZBTB18 JASPAR yes 70794780
chr19 6540072 6540085 ZBTB18 JASPAR yes 112274290
chr19 6540079 6540085 NFIC JASPAR yes 70794781
chr19 6540079 6540085 NFIC JASPAR yes 112274291
chr19 6540081 6540085 H1TF2 TRANSFAC yes 70794782
chr19 6540081 6540085 NFE TRANSFAC yes 70794783
chr19 6540081 6540085 SRF TRANSFAC yes 70794784
chr19 6540081 6540085 H1TF2 TRANSFAC yes 112274292
chr19 6540081 6540085 NFE TRANSFAC yes 112274293
chr19 6540081 6540085 SRF TRANSFAC yes 112274294
chr19 6540114 6540127 SMAD2 JASPAR yes 70794785
chr19 6540114 6540127 SMAD2 JASPAR yes 112274295
chr19 6540117 6540129 HLF JASPAR yes 70794786
chr19 6540117 6540129 HLF JASPAR yes 112274296
chr19 6540121 6540132 CDX2 JASPAR yes 70794787
chr19 6540121 6540132 CDX2 JASPAR yes 112274297
chr19 6540149 6540153 H1TF2 TRANSFAC yes 70794788
chr19 6540149 6540153 NFE TRANSFAC yes 70794789
chr19 6540149 6540153 SRF TRANSFAC yes 70794790
chr19 6540149 6540153 H1TF2 TRANSFAC yes 112274298
chr19 6540149 6540153 NFE TRANSFAC yes 112274299
chr19 6540149 6540153 SRF TRANSFAC yes 112274300
chr19 6540162 6540168 LEF1 TRANSFAC yes 70794791
chr19 6540162 6540168 SOX10 JASPAR yes 70794792
chr19 6540162 6540168 LEF1 TRANSFAC yes 112274301
chr19 6540162 6540168 SOX10 JASPAR yes 112274302
chr19 6540168 6540172 TEAD2 TRANSFAC yes 70794793
chr19 6540168 6540172 TEAD2 TRANSFAC yes 112274303
chr19 6540170 6540173 MYB TRANSFAC yes 70794794
chr19 6540170 6540173 MYB TRANSFAC yes 112274304
chr19 6540186 6540196 MEF2A JASPAR yes 70794795
chr19 6540186 6540196 MEF2A JASPAR yes 112274305
chr19 6540208 6540229 IRF1 JASPAR yes 70794796
chr19 6540208 6540229 IRF1 JASPAR yes 112274306
chr19 6540209 6540230 IRF1 JASPAR yes 70794797
chr19 6540209 6540230 IRF1 JASPAR yes 112274307
chr19 6540211 6540232 IRF1 JASPAR yes 70794798
chr19 6540211 6540232 IRF1 JASPAR yes 112274308
chr19 6540212 6540233 IRF1 JASPAR yes 70794799
chr19 6540212 6540233 IRF1 JASPAR yes 112274309
chr19 6540213 6540228 FOXP1 JASPAR yes 70794800
chr19 6540213 6540228 FOXP1 JASPAR yes 112274310
chr19 6540213 6540234 IRF1 JASPAR yes 70794801
chr19 6540213 6540234 IRF1 JASPAR yes 112274311
chr19 6540214 6540229 FOXP1 JASPAR yes 70794802
chr19 6540214 6540229 FOXP1 JASPAR yes 112274312
chr19 6540214 6540235 IRF1 JASPAR yes 70794803
chr19 6540214 6540235 IRF1 JASPAR yes 112274313
chr19 6540215 6540230 FOXP1 JASPAR yes 70794804
chr19 6540215 6540230 FOXP1 JASPAR yes 112274314
chr19 6540215 6540236 IRF1 JASPAR yes 70794805
chr19 6540215 6540236 IRF1 JASPAR yes 112274315
chr19 6540216 6540231 FOXP1 JASPAR yes 70794806
chr19 6540216 6540231 FOXP1 JASPAR yes 112274316
chr19 6540217 6540232 FOXP1 JASPAR yes 70794807
chr19 6540217 6540232 FOXP1 JASPAR yes 112274317
chr19 6540218 6540233 FOXP1 JASPAR yes 70794808
chr19 6540218 6540233 FOXP1 JASPAR yes 112274318
chr19 6540219 6540234 FOXP1 JASPAR yes 70794809
chr19 6540219 6540234 FOXP1 JASPAR yes 112274319
chr19 6540220 6540235 FOXP1 JASPAR yes 70794810
chr19 6540220 6540235 FOXP1 JASPAR yes 112274320
chr19 6540221 6540236 FOXP1 JASPAR yes 70794811
chr19 6540221 6540236 FOXP1 JASPAR yes 112274321
chr19 6540222 6540237 FOXP1 JASPAR yes 70794812
chr19 6540222 6540237 FOXP1 JASPAR yes 112274322
chr19 6540223 6540238 FOXP1 JASPAR yes 70794813
chr19 6540223 6540238 FOXP1 JASPAR yes 112274323
SNP sites on vista28439[chr19:6539979-6540238]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 6540109 rs146046906 C A
POLR2A
5415026
chr19 6540152 rs116351509 A G
H1TF2 NFE POLR2A SRF
5415027
chr19 6540188 rs79363088 T A
MEF2A POLR2A
5415028
chr19 6540208 rs35695923 T C
IRF1 POLR2A
5415029
Genes possibly regulated by vista28439[chr19:6539979-6540238]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 6436090 6465214 - SLC25A23 ENSG00000125648.10 6465214 0.83 1.0 16889 25235
chr19 6463788 6467232 + CRB3 ENSG00000130545.11 6463788 0.86 1.0 16890 23809
chr19 6467218 6482568 - DENND1C ENSG00000205744.5 6482568 0.9 1.0 16891 42589
chr19 6494330 6502859 - TUBB4A ENSG00000104833.6 6502859 0.97 1.0 16892 62880
chr19 6531010 6535931 + TNFSF9 ENSG00000125657.3 6531010 0.91 1.0 16893 91031
chr19 6583194 6604114 - CD70 ENSG00000125726.6 6604114 1.0 0.95 16894 36124
Expression level of Genes
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miRNAs possibly regulated by vista28439[chr19:6539979-6540238]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results