EnhancerDB
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  3. vista28689[chr19:13188264-13188490]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28689[chr19:13188264-13188490]
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Tissue distribution of vista28689
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Transcription factor that possibly regulate vista28689[chr19:13188264-13188490]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13188095 13188662 GATA1 UCSC Txn Factor no Conserved 108388764
chr19 13188269 13188284 RFX5 JASPAR yes 70808387
chr19 13188269 13188284 RFX5 JASPAR yes 112508871
chr19 13188274 13188279 TFAP2A TRANSFAC yes 70808388
chr19 13188274 13188279 TFAP2A TRANSFAC yes 112508872
chr19 13188274 13188280 MZF1 JASPAR yes 70808389
chr19 13188274 13188280 MZF1 JASPAR yes 112508873
chr19 13188276 13188289 ZBTB18 JASPAR yes 70808390
chr19 13188276 13188289 ZBTB18 JASPAR yes 112508874
chr19 13188278 13188288 MSC JASPAR yes 70808391
chr19 13188278 13188288 MYF6 JASPAR yes 70808392
chr19 13188278 13188288 NHLH1 JASPAR yes 70808393
chr19 13188278 13188288 TFAP4 JASPAR yes 70808394
chr19 13188278 13188288 MSC JASPAR yes 112508875
chr19 13188278 13188288 MYF6 JASPAR yes 112508876
chr19 13188278 13188288 NHLH1 JASPAR yes 112508877
chr19 13188278 13188288 TFAP4 JASPAR yes 112508878
chr19 13188287 13188299 NHLH1 JASPAR yes 70808395
chr19 13188287 13188299 NHLH1 JASPAR yes 112508879
chr19 13188287 13188300 ZBTB18 JASPAR yes 70808396
chr19 13188287 13188300 ZBTB18 JASPAR yes 112508880
chr19 13188288 13188298 FIGLA JASPAR yes 70808397
chr19 13188288 13188298 MSC JASPAR yes 70808398
chr19 13188288 13188298 TFAP4 JASPAR yes 70808399
chr19 13188288 13188298 FIGLA JASPAR yes 112508881
chr19 13188288 13188298 MSC JASPAR yes 112508882
chr19 13188288 13188298 TFAP4 JASPAR yes 112508883
chr19 13188288 13188300 TAL1 JASPAR yes 70808400
chr19 13188288 13188300 TAL1 JASPAR yes 112508884
chr19 13188305 13188315 MZF1 JASPAR yes 70808401
chr19 13188305 13188315 MZF1 JASPAR yes 112508885
chr19 13188306 13188316 SP1 JASPAR yes 70808402
chr19 13188306 13188316 SP1 JASPAR yes 112508886
chr19 13188307 13188317 SP1 JASPAR yes 70808403
chr19 13188307 13188317 SP1 JASPAR yes 112508887
chr19 13188308 13188314 SP1 TRANSFAC yes 70808404
chr19 13188308 13188314 SP1 TRANSFAC yes 112508888
chr19 13188308 13188318 SP1 JASPAR yes 70808405
chr19 13188308 13188318 SP1 JASPAR yes 112508889
chr19 13188309 13188319 ZNF740 JASPAR yes 70808406
chr19 13188309 13188319 ZNF740 JASPAR yes 112508890
chr19 13188309 13188323 ZIC1 JASPAR yes 70808407
chr19 13188309 13188323 ZIC1 JASPAR yes 112508891
chr19 13188309 13188324 ZIC3 JASPAR yes 70808408
chr19 13188309 13188324 ZIC4 JASPAR yes 70808409
chr19 13188309 13188324 ZIC3 JASPAR yes 112508892
chr19 13188309 13188324 ZIC4 JASPAR yes 112508893
chr19 13188312 13188318 MZF1 JASPAR yes 70808410
chr19 13188312 13188318 MZF1 JASPAR yes 112508894
chr19 13188321 13188333 PKNOX1 JASPAR yes 70808411
chr19 13188321 13188333 PKNOX2 JASPAR yes 70808412
chr19 13188321 13188333 TGIF1 JASPAR yes 70808413
chr19 13188321 13188333 TGIF2 JASPAR yes 70808414
chr19 13188321 13188333 PKNOX1 JASPAR yes 112508895
chr19 13188321 13188333 PKNOX2 JASPAR yes 112508896
chr19 13188321 13188333 TGIF1 JASPAR yes 112508897
chr19 13188321 13188333 TGIF2 JASPAR yes 112508898
chr19 13188327 13188331 NFE TRANSFAC yes 70808415
chr19 13188327 13188331 NFE TRANSFAC yes 112508899
chr19 13188339 13188351 NHLH1 JASPAR yes 70808416
chr19 13188339 13188351 NHLH1 JASPAR yes 112508900
chr19 13188340 13188350 MSC JASPAR yes 70808417
chr19 13188340 13188350 NHLH1 JASPAR yes 70808418
chr19 13188340 13188350 TFAP4 JASPAR yes 70808419
chr19 13188340 13188350 MSC JASPAR yes 112508901
chr19 13188340 13188350 NHLH1 JASPAR yes 112508902
chr19 13188340 13188350 TFAP4 JASPAR yes 112508903
chr19 13188352 13188365 EOMES JASPAR yes 70808420
chr19 13188352 13188365 EOMES JASPAR yes 112508904
chr19 13188353 13188360 GATA3 TRANSFAC yes 70808421
chr19 13188353 13188360 GATA3 TRANSFAC yes 112508905
chr19 13188353 13188361 GATA5 JASPAR yes 70808422
chr19 13188353 13188361 GATA5 JASPAR yes 112508906
chr19 13188354 13188364 TBR1 JASPAR yes 70808423
chr19 13188354 13188364 TBR1 JASPAR yes 112508907
chr19 13188354 13188365 TBX20 JASPAR yes 70808424
chr19 13188354 13188365 TBX20 JASPAR yes 112508908
chr19 13188355 13188365 TBX21 JASPAR yes 70808425
chr19 13188355 13188365 TBX21 JASPAR yes 112508909
chr19 13188356 13188359 MYB TRANSFAC yes 70808426
chr19 13188356 13188359 MYB TRANSFAC yes 112508910
chr19 13188356 13188364 MGA JASPAR yes 70808427
chr19 13188356 13188364 TBX15 JASPAR yes 70808428
chr19 13188356 13188364 TBX1 JASPAR yes 70808429
chr19 13188356 13188364 TBX4 JASPAR yes 70808430
chr19 13188356 13188364 TBX5 JASPAR yes 70808431
chr19 13188356 13188364 MGA JASPAR yes 112508911
chr19 13188356 13188364 TBX15 JASPAR yes 112508912
chr19 13188356 13188364 TBX1 JASPAR yes 112508913
chr19 13188356 13188364 TBX4 JASPAR yes 112508914
chr19 13188356 13188364 TBX5 JASPAR yes 112508915
chr19 13188385 13188395 SP1 JASPAR yes 70808432
chr19 13188385 13188395 SP1 JASPAR yes 112508916
chr19 13188385 13188406 ZNF263 JASPAR yes 70808433
chr19 13188385 13188406 ZNF263 JASPAR yes 112508917
chr19 13188386 13188407 ZNF263 JASPAR yes 70808434
chr19 13188386 13188407 ZNF263 JASPAR yes 112508918
chr19 13188390 13188399 SP1 TRANSFAC yes 70808435
chr19 13188390 13188399 SP1 TRANSFAC yes 112508919
chr19 13188391 13188397 SP1 TRANSFAC yes 70808436
chr19 13188391 13188397 SP1 TRANSFAC yes 112508920
chr19 13188391 13188401 SP1 JASPAR yes 70808437
chr19 13188391 13188401 SP1 JASPAR yes 112508921
chr19 13188392 13188399 SP1 TRANSFAC yes 70808438
chr19 13188392 13188399 SP1 TRANSFAC yes 112508922
chr19 13188393 13188398 SP1 TRANSFAC yes 70808439
chr19 13188393 13188398 SP1 TRANSFAC yes 112508923
chr19 13188393 13188399 SP1 TRANSFAC yes 70808440
chr19 13188393 13188399 SP1 TRANSFAC yes 112508924
chr19 13188397 13188416 CTCF JASPAR yes 70808441
chr19 13188397 13188416 CTCF JASPAR yes 112508925
chr19 13188413 13188425 YY1 JASPAR yes 70808442
chr19 13188413 13188425 YY1 JASPAR yes 112508926
chr19 13188416 13188422 YY1 JASPAR yes 70808443
chr19 13188416 13188422 YY1 JASPAR yes 112508927
chr19 13188426 13188430 YY1 TRANSFAC yes 70808444
chr19 13188426 13188430 YY1 TRANSFAC yes 112508928
chr19 13188442 13188457 NR2C2 JASPAR yes 70808445
chr19 13188442 13188457 NR2C2 JASPAR yes 112508929
chr19 13188444 13188450 SP1 TRANSFAC yes 70808446
chr19 13188444 13188450 SP1 TRANSFAC yes 112508930
chr19 13188449 13188469 RREB1 JASPAR yes 70808447
chr19 13188449 13188469 RREB1 JASPAR yes 112508931
chr19 13188452 13188462 SP1 JASPAR yes 70808448
chr19 13188452 13188462 SP1 JASPAR yes 112508932
chr19 13188489 13188501 PKNOX1 JASPAR yes 70808449
chr19 13188489 13188501 PKNOX2 JASPAR yes 70808450
chr19 13188489 13188501 TGIF1 JASPAR yes 70808451
chr19 13188489 13188501 TGIF2 JASPAR yes 70808452
chr19 13188489 13188501 PKNOX1 JASPAR yes 112508933
chr19 13188489 13188501 PKNOX2 JASPAR yes 112508934
chr19 13188489 13188501 TGIF1 JASPAR yes 112508935
chr19 13188489 13188501 TGIF2 JASPAR yes 112508936
chr19 13188490 13188500 NHLH1 JASPAR yes 70808453
chr19 13188490 13188500 NHLH1 JASPAR yes 112508937
SNP sites on vista28689[chr19:13188264-13188490]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13188290 rs114754486 A G
FIGLA GATA1 MSC NHLH1 TAL1 TFAP4 ZBTB18
5448655
chr19 13188320 rs374213392 T C
GATA1 ZIC1 ZIC3 ZIC4
5448656
Genes possibly regulated by vista28689[chr19:13188264-13188490]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13106422 13209610 + NFIX ENSG00000008441.12 13106422 0.8 0.99 17111 18158
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 74515
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 60109
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 59573
chr19 13254872 13261197 - STX10 ENSG00000104915.10 13261197 0.58 1.0 17115 27293
chr19 13261229 13265722 + IER2 ENSG00000160888.6 13261229 0.7 1.0 17116 27261
Expression level of Genes
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miRNAs possibly regulated by vista28689[chr19:13188264-13188490]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results