EnhancerDB
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  3. vista3866[chr1:171398423-171398658]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3866[chr1:171398423-171398658]
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Tissue distribution of vista3866
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Transcription factor that possibly regulate vista3866[chr1:171398423-171398658]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 171398405 171398424 CTCF JASPAR yes 33079662
chr1 171398405 171398424 CTCF JASPAR yes 118397822
chr1 171398409 171398423 SPIC JASPAR yes 33079663
chr1 171398409 171398423 SPIC JASPAR yes 118397823
chr1 171398416 171398437 IRF1 JASPAR yes 33079665
chr1 171398416 171398437 IRF1 JASPAR yes 118397824
chr1 171398422 171398443 IRF1 JASPAR yes 33079666
chr1 171398422 171398443 IRF1 JASPAR yes 118397825
chr1 171398425 171398439 IRF8 JASPAR yes 33079667
chr1 171398425 171398439 IRF8 JASPAR yes 118397826
chr1 171398426 171398440 SPI1 JASPAR yes 33079668
chr1 171398426 171398440 STAT1 JASPAR yes 33079669
chr1 171398426 171398440 SPI1 JASPAR yes 118397827
chr1 171398426 171398440 STAT1 JASPAR yes 118397828
chr1 171398426 171398441 STAT2 JASPAR yes 33079670
chr1 171398426 171398441 STAT2 JASPAR yes 118397829
chr1 171398457 171398468 E2F6 JASPAR yes 33079671
chr1 171398457 171398468 E2F6 JASPAR yes 118397830
chr1 171398466 171398472 LEF1 TRANSFAC yes 33079672
chr1 171398466 171398472 SOX10 JASPAR yes 33079673
chr1 171398466 171398472 LEF1 TRANSFAC yes 118397831
chr1 171398466 171398472 SOX10 JASPAR yes 118397832
chr1 171398534 171398545 STAT3 JASPAR yes 33079674
chr1 171398534 171398545 STAT3 JASPAR yes 118397833
chr1 171398549 171398553 NFE TRANSFAC yes 33079675
chr1 171398549 171398553 NFE TRANSFAC yes 118397834
chr1 171398553 171398561 ISL2 JASPAR yes 33079676
chr1 171398553 171398561 ISL2 JASPAR yes 118397835
chr1 171398553 171398562 NKX3-2 JASPAR yes 33079677
chr1 171398553 171398562 NKX3-2 JASPAR yes 118397836
chr1 171398581 171398596 SCRT1 JASPAR yes 33079678
chr1 171398581 171398596 SCRT1 JASPAR yes 118397837
chr1 171398582 171398592 MYF6 JASPAR yes 33079679
chr1 171398582 171398592 MYF6 JASPAR yes 118397838
chr1 171398594 171398597 MYB TRANSFAC yes 33079680
chr1 171398594 171398597 MYB TRANSFAC yes 118397839
chr1 171398619 171398623 ESR1 TRANSFAC yes 33079681
chr1 171398619 171398623 ESR1 TRANSFAC yes 118397840
SNP sites on vista3866[chr1:171398423-171398658]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 171398442 rs557944576 G A
IRF1
724157
chr1 171398470 rs369438048 TG T
LEF1 SOX10
724158
chr1 171398500 rs146697389 C T no 724159
chr1 171398548 rs376363459 TTCTG T no 724160
chr1 171398548 rs539130147 TTCTG T no 724161
chr1 171398554 rs140214575 C G
ISL2 NKX3-2
724162
chr1 171398579 rs145264523 G A no 724163
Genes possibly regulated by vista3866[chr1:171398423-171398658]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 171454651 171562650 + PRRC2C ENSG00000117523.11 171454651 0.67 0.99 1566 44007
Expression level of Genes
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miRNAs possibly regulated by vista3866[chr1:171398423-171398658]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results