EnhancerDB
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  3. rs557944576[chr1:171398442]
Enhancers that have rs557944576[chr1:171398442]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
chr1 171398423 171398658 vista3866
VISTA
Transcript factors that have rs557944576[chr1:171398442]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 21349642
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 107845396
chr1 171398199 171398476 ZNF274 GTRD no Bone Marrow (K562) 107845397
chr1 171398283 171398559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107845398
chr1 171398422 171398443 IRF1 JASPAR yes 33079666
chr1 171398422 171398443 IRF1 JASPAR yes 118397825
chr1 171398422 171398514 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107845399
Genes associated with rs557944576[chr1:171398442], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More