EnhancerDB
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  3. vista4025[chr1:178041559-178041872]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista4025[chr1:178041559-178041872]
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Tissue distribution of vista4025
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Transcription factor that possibly regulate vista4025[chr1:178041559-178041872]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 178041581 178041584 MYB TRANSFAC yes 118404893
chr1 178041592 178041608 T JASPAR yes 118404894
chr1 178041597 178041601 YY1 TRANSFAC yes 118404895
chr1 178041600 178041615 MAFK JASPAR yes 118404896
chr1 178041604 178041615 NRL JASPAR yes 118404897
chr1 178041625 178041635 MAX JASPAR yes 118404898
chr1 178041625 178041636 USF1 JASPAR yes 118404899
chr1 178041625 178041636 USF2 JASPAR yes 118404900
chr1 178041626 178041636 TFEB JASPAR yes 118404901
chr1 178041674 178041681 NFATC2 JASPAR yes 118404902
chr1 178041674 178041685 NFKB1 JASPAR yes 118404903
chr1 178041675 178041685 REL JASPAR yes 118404904
chr1 178041675 178041686 NFKB1 JASPAR yes 118404905
chr1 178041686 178041697 USF1 JASPAR yes 118404906
chr1 178041686 178041697 USF2 JASPAR yes 118404907
chr1 178041687 178041697 MLXIPL JASPAR yes 118404908
chr1 178041687 178041697 SREBF2 JASPAR yes 118404909
chr1 178041687 178041697 TFE3 JASPAR yes 118404910
chr1 178041687 178041697 TFEB JASPAR yes 118404911
chr1 178041687 178041697 TFEC JASPAR yes 118404912
chr1 178041687 178041698 USF1 JASPAR yes 118404913
chr1 178041692 178041712 TP53 JASPAR yes 118404914
chr1 178041694 178041714 TP63 JASPAR yes 118404915
chr1 178041695 178041713 TP53 JASPAR yes 118404916
chr1 178041695 178041713 TP73 JASPAR yes 118404917
chr1 178041696 178041711 TP53 JASPAR yes 118404918
chr1 178041726 178041736 EN2 JASPAR yes 118404919
chr1 178041726 178041736 GBX1 JASPAR yes 118404920
chr1 178041726 178041736 GBX2 JASPAR yes 118404921
chr1 178041726 178041736 LBX2 JASPAR yes 118404922
chr1 178041726 178041736 LHX2 JASPAR yes 118404923
chr1 178041727 178041731 H1TF2 TRANSFAC yes 118404924
chr1 178041727 178041731 NFE TRANSFAC yes 118404925
chr1 178041727 178041731 SRF TRANSFAC yes 118404926
chr1 178041727 178041735 BARX1 JASPAR yes 118404927
chr1 178041727 178041735 BSX JASPAR yes 118404928
chr1 178041727 178041735 EN1 JASPAR yes 118404929
chr1 178041727 178041735 ISX JASPAR yes 118404930
chr1 178041727 178041735 LHX9 JASPAR yes 118404931
chr1 178041727 178041735 MSX1 JASPAR yes 118404932
chr1 178041727 178041735 MSX2 JASPAR yes 118404933
chr1 178041727 178041735 PRRX1 JASPAR yes 118404934
chr1 178041727 178041735 RAX2 JASPAR yes 118404935
chr1 178041727 178041735 SHOX JASPAR yes 118404936
chr1 178041744 178041759 STAT1 JASPAR yes 118404937
chr1 178041746 178041757 STAT3 JASPAR yes 118404938
chr1 178041768 178041785 RXRA JASPAR yes 118404939
chr1 178041779 178041782 MYB TRANSFAC yes 118404940
chr1 178041786 178041790 YY1 TRANSFAC yes 118404941
chr1 178041814 178041819 TFAP2A TRANSFAC yes 118404942
chr1 178041814 178041820 MZF1 JASPAR yes 118404943
chr1 178041834 178041843 SRY JASPAR yes 118404944
chr1 178041837 178041853 SOX8 JASPAR yes 118404945
chr1 178041854 178041857 MYB TRANSFAC yes 118404946
chr1 178041854 178041865 PHOX2A JASPAR yes 118404947
chr1 178041854 178041865 PROP1 JASPAR yes 118404948
chr1 178041857 178041867 GBX2 JASPAR yes 118404949
chr1 178041857 178041867 HOXB3 JASPAR yes 118404950
chr1 178041857 178041867 MNX1 JASPAR yes 118404951
chr1 178041858 178041866 BARX1 JASPAR yes 118404952
chr1 178041858 178041866 BSX JASPAR yes 118404953
chr1 178041858 178041866 ISL2 JASPAR yes 118404954
chr1 178041858 178041866 LMX1B JASPAR yes 118404955
chr1 178041858 178041866 MSX1 JASPAR yes 118404956
chr1 178041858 178041866 MSX2 JASPAR yes 118404957
chr1 178041858 178041867 VENTX JASPAR yes 118404958
SNP sites on vista4025[chr1:178041559-178041872]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 178041655 rs10465513 A G no 752457
chr1 178041677 rs548736639 G A
NFATC2 NFKB1 REL
752458
chr1 178041713 rs78561198 T G
TP53 TP63 TP73
752459
chr1 178041758 rs559718215 T C
STAT1
752460
chr1 178041772 rs16852409 A G
RXRA
752461
chr1 178041781 rs192194080 A C
MYB RXRA
752462
chr1 178041862 rs115874799 A G
BARX1 BSX GBX2 HOXB3 ISL2 LMX1B MNX1 MSX1 MSX2 PHOX2A PROP1 VENTX
752463
Genes possibly regulated by vista4025[chr1:178041559-178041872]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 177893091 177953438 - SEC16B ENSG00000120341.14 177953438 0.89 0.97 1597 11879
chr1 178062864 178448644 + RASAL2 ENSG00000075391.12 178062864 0.74 1.0 1598 79008
Expression level of Genes
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miRNAs possibly regulated by vista4025[chr1:178041559-178041872]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results