EnhancerDB
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  3. vista50208[chr5:172729503-172729731]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50208[chr5:172729503-172729731]
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Tissue distribution of vista50208
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Transcription factor that possibly regulate vista50208[chr5:172729503-172729731]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 172729332 172730116 TCF7L2 UCSC Txn Factor no Conserved 108537554
chr5 172729460 172730075 TFAP2C UCSC Txn Factor no Conserved 108537555
chr5 172729490 172730094 TFAP2A UCSC Txn Factor no Conserved 108537556
chr5 172729507 172729744 NFYB UCSC Txn Factor no Conserved 108537557
chr5 172729503 172729513 CUX1 JASPAR yes 67865918
chr5 172729503 172729513 CUX2 JASPAR yes 67865919
chr5 172729503 172729513 CUX1 JASPAR yes 70765435
chr5 172729503 172729513 CUX2 JASPAR yes 70765436
chr5 172729504 172729525 IRF1 JASPAR yes 67865920
chr5 172729504 172729525 IRF1 JASPAR yes 70765437
chr5 172729507 172729521 SPI1 JASPAR yes 67865921
chr5 172729507 172729521 SPI1 JASPAR yes 70765438
chr5 172729509 172729527 IRF2 JASPAR yes 67865922
chr5 172729509 172729527 IRF2 JASPAR yes 70765439
chr5 172729510 172729531 IRF1 JASPAR yes 67865923
chr5 172729510 172729531 IRF1 JASPAR yes 70765440
chr5 172729512 172729527 PRDM1 JASPAR yes 67865924
chr5 172729512 172729527 PRDM1 JASPAR yes 70765441
chr5 172729522 172729532 NFIA JASPAR yes 67865925
chr5 172729522 172729532 NFIA JASPAR yes 70765442
chr5 172729523 172729532 NFIX JASPAR yes 67865926
chr5 172729523 172729532 NFIX JASPAR yes 70765443
chr5 172729524 172729530 NFIC JASPAR yes 67865927
chr5 172729524 172729530 NFIC JASPAR yes 70765444
chr5 172729551 172729572 IRF1 JASPAR yes 67865928
chr5 172729551 172729572 IRF1 JASPAR yes 70765445
chr5 172729552 172729557 ETS2 TRANSFAC yes 67865929
chr5 172729552 172729557 ETS2 TRANSFAC yes 70765446
chr5 172729552 172729560 FEV JASPAR yes 67865930
chr5 172729552 172729560 FEV JASPAR yes 70765447
chr5 172729553 172729568 IRF9 JASPAR yes 67865931
chr5 172729553 172729568 IRF9 JASPAR yes 70765448
chr5 172729575 172729593 ESR1 JASPAR yes 67865932
chr5 172729575 172729593 ESR1 JASPAR yes 70765449
chr5 172729578 172729583 SP1 TRANSFAC yes 67865933
chr5 172729578 172729583 SP1 TRANSFAC yes 70765450
chr5 172729592 172729611 REST JASPAR yes 67865934
chr5 172729592 172729611 REST JASPAR yes 70765451
chr5 172729608 172729618 SMAD3 JASPAR yes 67865935
chr5 172729608 172729618 SMAD3 JASPAR yes 70765452
chr5 172729613 172729627 JUN JASPAR yes 67865936
chr5 172729613 172729627 JUN JASPAR yes 70765453
chr5 172729616 172729627 FOSL2 JASPAR yes 67865937
chr5 172729616 172729627 JUNB JASPAR yes 67865938
chr5 172729616 172729627 FOSL2 JASPAR yes 70765454
chr5 172729616 172729627 JUNB JASPAR yes 70765455
chr5 172729617 172729628 FOS JASPAR yes 67865939
chr5 172729617 172729628 FOSL1 JASPAR yes 67865940
chr5 172729617 172729628 JUND JASPAR yes 67865941
chr5 172729617 172729628 FOS JASPAR yes 70765456
chr5 172729617 172729628 FOSL1 JASPAR yes 70765457
chr5 172729617 172729628 JUND JASPAR yes 70765458
chr5 172729618 172729625 JUN TRANSFAC yes 67865942
chr5 172729618 172729625 JUN TRANSFAC yes 70765459
chr5 172729618 172729629 JUNB JASPAR yes 67865943
chr5 172729618 172729629 NFE2L2 JASPAR yes 67865944
chr5 172729618 172729629 JUNB JASPAR yes 70765460
chr5 172729618 172729629 NFE2L2 JASPAR yes 70765461
chr5 172729619 172729630 BATF JASPAR yes 67865945
chr5 172729619 172729630 BATF JASPAR yes 70765462
chr5 172729625 172729640 NFYB JASPAR yes 67865946
chr5 172729625 172729640 NFYB JASPAR yes 70765463
chr5 172729627 172729643 NFYA JASPAR yes 67865947
chr5 172729627 172729643 NFYA JASPAR yes 70765464
chr5 172729628 172729646 NFYA JASPAR yes 67865948
chr5 172729628 172729646 NFYA JASPAR yes 70765465
chr5 172729632 172729636 H1TF2 TRANSFAC yes 67865949
chr5 172729632 172729636 NFE TRANSFAC yes 67865950
chr5 172729632 172729636 SRF TRANSFAC yes 67865951
chr5 172729632 172729636 H1TF2 TRANSFAC yes 70765466
chr5 172729632 172729636 NFE TRANSFAC yes 70765467
chr5 172729632 172729636 SRF TRANSFAC yes 70765468
chr5 172729633 172729653 ESR1 JASPAR yes 67865952
chr5 172729633 172729653 ESR1 JASPAR yes 70765469
chr5 172729637 172729655 ESR2 JASPAR yes 67865953
chr5 172729637 172729655 ESR2 JASPAR yes 70765470
chr5 172729638 172729653 ESR2 JASPAR yes 67865954
chr5 172729638 172729653 ESR2 JASPAR yes 70765471
chr5 172729685 172729704 PAX5 JASPAR yes 67865955
chr5 172729685 172729704 PAX5 JASPAR yes 70765472
chr5 172729690 172729704 PAX6 JASPAR yes 67865956
chr5 172729690 172729704 PAX6 JASPAR yes 70765473
SNP sites on vista50208[chr5:172729503-172729731]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 172729543 rs562399217 T C
NFYB TCF7L2 TFAP2A TFAP2C
8708798
chr5 172729560 rs114741601 T C
FEV IRF1 IRF9 NFYB TCF7L2 TFAP2A TFAP2C
8708799
chr5 172729616 rs370797270 A C
FOSL2 JUN JUNB NFYB SMAD3 TCF7L2 TFAP2A TFAP2C
8708800
chr5 172729664 rs77598047 A G
NFYB TCF7L2 TFAP2A TFAP2C
8708801
Genes possibly regulated by vista50208[chr5:172729503-172729731]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 172659112 172662360 - NKX2-5 ENSG00000183072.9 172662360 0.98 0.99 5991 32857
chr5 172741716 172756506 - STC2 ENSG00000113739.6 172756506 0.92 1.0 5992 73225
Expression level of Genes
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miRNAs possibly regulated by vista50208[chr5:172729503-172729731]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results