EnhancerDB
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  3. vista50956[chr6:13428547-13428865]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50956[chr6:13428547-13428865]
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Tissue distribution of vista50956
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Transcription factor that possibly regulate vista50956[chr6:13428547-13428865]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 13427953 13428867 NFIC UCSC Txn Factor no Conserved 108538597
chr6 13427977 13428828 RUNX3 UCSC Txn Factor no Conserved 108538598
chr6 13428381 13428743 SPI1 UCSC Txn Factor no Conserved 108538599
chr6 13428393 13428741 ATF2 UCSC Txn Factor no Conserved 108538600
chr6 13428412 13428875 CTCF UCSC Txn Factor no Conserved 108538601
chr6 13428828 13429031 EBF1 UCSC Txn Factor no Conserved 108538602
chr6 13428559 13428576 ESR1 JASPAR yes 70315946
chr6 13428559 13428576 ESR1 JASPAR yes 100029575
chr6 13428569 13428581 PKNOX1 JASPAR yes 70315947
chr6 13428569 13428581 PKNOX2 JASPAR yes 70315948
chr6 13428569 13428581 TGIF1 JASPAR yes 70315949
chr6 13428569 13428581 TGIF2 JASPAR yes 70315950
chr6 13428569 13428581 PKNOX1 JASPAR yes 100029576
chr6 13428569 13428581 PKNOX2 JASPAR yes 100029577
chr6 13428569 13428581 TGIF1 JASPAR yes 100029578
chr6 13428569 13428581 TGIF2 JASPAR yes 100029579
chr6 13428583 13428597 MTF1 JASPAR yes 70315951
chr6 13428583 13428597 MTF1 JASPAR yes 100029580
chr6 13428600 13428610 SP1 JASPAR yes 70315952
chr6 13428600 13428610 SP1 JASPAR yes 100029581
chr6 13428600 13428621 ZNF263 JASPAR yes 70315953
chr6 13428600 13428621 ZNF263 JASPAR yes 100029582
chr6 13428601 13428622 ZNF263 JASPAR yes 70315954
chr6 13428601 13428622 ZNF263 JASPAR yes 100029583
chr6 13428606 13428611 TFAP2A TRANSFAC yes 70315955
chr6 13428606 13428611 TFAP2A TRANSFAC yes 100029584
chr6 13428606 13428612 MZF1 JASPAR yes 70315956
chr6 13428606 13428612 MZF1 JASPAR yes 100029585
chr6 13428606 13428619 ELF1 JASPAR yes 70315957
chr6 13428606 13428619 ELF1 JASPAR yes 100029586
chr6 13428606 13428627 ZNF263 JASPAR yes 70315958
chr6 13428606 13428627 ZNF263 JASPAR yes 100029587
chr6 13428609 13428615 PEA3 TRANSFAC yes 70315959
chr6 13428609 13428615 PEA3 TRANSFAC yes 100029588
chr6 13428609 13428619 ETV6 JASPAR yes 70315960
chr6 13428609 13428619 ETV6 JASPAR yes 100029589
chr6 13428609 13428620 ELK4 JASPAR yes 70315961
chr6 13428609 13428620 FLI1 JASPAR yes 70315962
chr6 13428609 13428620 ELK4 JASPAR yes 100029590
chr6 13428609 13428620 FLI1 JASPAR yes 100029591
chr6 13428610 13428618 EHF JASPAR yes 70315963
chr6 13428610 13428618 EHF JASPAR yes 100029592
chr6 13428611 13428618 SPI1 JASPAR yes 70315964
chr6 13428611 13428618 SPI1 JASPAR yes 100029593
chr6 13428611 13428626 PRDM1 JASPAR yes 70315965
chr6 13428611 13428626 PRDM1 JASPAR yes 100029594
chr6 13428630 13428651 ZNF263 JASPAR yes 70315966
chr6 13428630 13428651 ZNF263 JASPAR yes 100029595
chr6 13428636 13428647 E2F1 JASPAR yes 70315967
chr6 13428636 13428647 E2F1 JASPAR yes 100029596
chr6 13428637 13428642 SP1 TRANSFAC yes 70315968
chr6 13428637 13428642 SP1 TRANSFAC yes 100029597
chr6 13428637 13428648 E2F4 JASPAR yes 70315969
chr6 13428637 13428648 E2F6 JASPAR yes 70315970
chr6 13428637 13428648 E2F4 JASPAR yes 100029598
chr6 13428637 13428648 E2F6 JASPAR yes 100029599
chr6 13428638 13428643 SP1 TRANSFAC yes 70315971
chr6 13428638 13428643 SP1 TRANSFAC yes 100029600
chr6 13428642 13428652 SP1 JASPAR yes 70315972
chr6 13428642 13428652 SP1 JASPAR yes 100029601
chr6 13428643 13428650 CEBPA TRANSFAC yes 70315973
chr6 13428643 13428650 CEBPA TRANSFAC yes 100029602
chr6 13428653 13428668 TFAP2A JASPAR yes 70315974
chr6 13428653 13428668 TFAP2A JASPAR yes 100029603
chr6 13428655 13428670 TFAP2C JASPAR yes 70315975
chr6 13428655 13428670 TFAP2C JASPAR yes 100029604
chr6 13428656 13428667 TFAP2A JASPAR yes 70315976
chr6 13428656 13428667 TFAP2B JASPAR yes 70315977
chr6 13428656 13428667 TFAP2C JASPAR yes 70315978
chr6 13428656 13428667 TFAP2A JASPAR yes 100029605
chr6 13428656 13428667 TFAP2B JASPAR yes 100029606
chr6 13428656 13428667 TFAP2C JASPAR yes 100029607
chr6 13428682 13428696 STAT1 JASPAR yes 70315979
chr6 13428682 13428696 STAT1 JASPAR yes 100029608
chr6 13428696 13428710 POU1F1 JASPAR yes 70315980
chr6 13428696 13428710 POU1F1 JASPAR yes 100029609
chr6 13428697 13428709 POU3F1 JASPAR yes 70315981
chr6 13428697 13428709 POU3F2 JASPAR yes 70315982
chr6 13428697 13428709 POU3F1 JASPAR yes 100029610
chr6 13428697 13428709 POU3F2 JASPAR yes 100029611
chr6 13428697 13428710 POU3F3 JASPAR yes 70315983
chr6 13428697 13428710 POU3F3 JASPAR yes 100029612
chr6 13428698 13428702 YY1 TRANSFAC yes 70315984
chr6 13428698 13428702 YY1 TRANSFAC yes 100029613
chr6 13428699 13428713 IRF7 JASPAR yes 70315985
chr6 13428699 13428713 IRF7 JASPAR yes 100029614
chr6 13428702 13428719 RXRA JASPAR yes 70315986
chr6 13428702 13428719 RXRA JASPAR yes 100029615
chr6 13428704 13428708 YY1 TRANSFAC yes 70315987
chr6 13428704 13428708 YY1 TRANSFAC yes 100029616
chr6 13428705 13428715 NFATC3 JASPAR yes 70315988
chr6 13428705 13428715 NFATC3 JASPAR yes 100029617
chr6 13428706 13428713 NFATC2 JASPAR yes 70315989
chr6 13428706 13428713 NFATC2 JASPAR yes 100029618
chr6 13428710 13428728 RARA JASPAR yes 70315990
chr6 13428710 13428728 RARA JASPAR yes 100029619
chr6 13428753 13428768 STAT2 JASPAR yes 70315991
chr6 13428753 13428768 STAT2 JASPAR yes 100029620
chr6 13428761 13428765 YY1 TRANSFAC yes 70315992
chr6 13428761 13428765 YY1 TRANSFAC yes 100029621
chr6 13428770 13428784 PLAG1 JASPAR yes 70315993
chr6 13428770 13428784 PLAG1 JASPAR yes 100029622
chr6 13428772 13428785 EOMES JASPAR yes 70315994
chr6 13428772 13428785 EOMES JASPAR yes 100029623
chr6 13428774 13428784 TBR1 JASPAR yes 70315995
chr6 13428774 13428784 TBR1 JASPAR yes 100029624
chr6 13428774 13428785 TBX20 JASPAR yes 70315996
chr6 13428774 13428785 TBX2 JASPAR yes 70315997
chr6 13428774 13428785 TBX20 JASPAR yes 100029625
chr6 13428774 13428785 TBX2 JASPAR yes 100029626
chr6 13428775 13428785 TBX21 JASPAR yes 70315998
chr6 13428775 13428785 TBX21 JASPAR yes 100029627
chr6 13428776 13428784 MGA JASPAR yes 70315999
chr6 13428776 13428784 TBX15 JASPAR yes 70316000
chr6 13428776 13428784 TBX1 JASPAR yes 70316001
chr6 13428776 13428784 TBX4 JASPAR yes 70316002
chr6 13428776 13428784 TBX5 JASPAR yes 70316003
chr6 13428776 13428784 MGA JASPAR yes 100029628
chr6 13428776 13428784 TBX15 JASPAR yes 100029629
chr6 13428776 13428784 TBX1 JASPAR yes 100029630
chr6 13428776 13428784 TBX4 JASPAR yes 100029631
chr6 13428776 13428784 TBX5 JASPAR yes 100029632
chr6 13428788 13428792 YY1 TRANSFAC yes 70316004
chr6 13428788 13428792 YY1 TRANSFAC yes 100029633
chr6 13428809 13428818 SOX9 JASPAR yes 70316005
chr6 13428809 13428818 SOX9 JASPAR yes 100029634
chr6 13428813 13428823 NFATC3 JASPAR yes 70316006
chr6 13428813 13428823 NFATC3 JASPAR yes 100029635
chr6 13428815 13428822 NFATC2 JASPAR yes 70316007
chr6 13428815 13428822 NFATC2 JASPAR yes 100029636
chr6 13428844 13428859 TFAP2C JASPAR yes 70316008
chr6 13428844 13428859 TFAP2C JASPAR yes 100029637
chr6 13428849 13428854 TFAP2A TRANSFAC yes 70316009
chr6 13428849 13428854 TFAP2A TRANSFAC yes 100029638
chr6 13428849 13428855 MZF1 JASPAR yes 70316010
chr6 13428849 13428855 MZF1 JASPAR yes 100029639
chr6 13428852 13428862 RELA JASPAR yes 70316011
chr6 13428852 13428862 RELA JASPAR yes 100029640
chr6 13428856 13428871 SCRT1 JASPAR yes 70316012
chr6 13428856 13428871 SCRT1 JASPAR yes 100029641
chr6 13428860 13428870 MYF6 JASPAR yes 70316013
chr6 13428860 13428870 MYF6 JASPAR yes 100029642
chr6 13428862 13428867 MYC TRANSFAC yes 70316014
chr6 13428862 13428867 MYC TRANSFAC yes 100029643
SNP sites on vista50956[chr6:13428547-13428865]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 13428571 rs142136392 G T
ATF2 CTCF ESR1 NFIC PKNOX1 PKNOX2 RUNX3 SPI1 TGIF1 TGIF2
8844318
chr6 13428738 rs199681153 GTGCGA G
ATF2 CTCF NFIC RUNX3 SPI1
8844319
chr6 13428738 rs56013716 GTGCGA G
ATF2 CTCF NFIC RUNX3 SPI1
8844320
chr6 13428738 rs71805154 GTGCGA G
ATF2 CTCF NFIC RUNX3 SPI1
8844321
chr6 13428738 rs775656795 GTGCGA G
ATF2 CTCF NFIC RUNX3 SPI1
8844322
chr6 13428782 rs115670467 C T
CTCF EOMES MGA NFIC PLAG1 RUNX3 TBR1 TBX1 TBX15 TBX2 TBX20 TBX21 TBX4 TBX5
8844323
chr6 13428800 rs547872311 G A
CTCF NFIC RUNX3
8844324
chr6 13428803 rs16874155 G A
CTCF NFIC RUNX3
8844325
Genes possibly regulated by vista50956[chr6:13428547-13428865]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 13266774 13328815 - TBC1D7 ENSG00000145979.13 13328815 0.85 0.99 6165 268
chr6 13358062 13487894 - GFOD1 ENSG00000145990.6 13487894 0.75 0.98 6166 40971
chr6 13469513 13486415 - AL583828.1 ENSG00000187461.5 13486415 1.0 0.91 6167 42450
Expression level of Genes
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miRNAs possibly regulated by vista50956[chr6:13428547-13428865]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results