EnhancerDB
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  3. rs142136392[chr6:13428571]
Enhancers that have rs142136392[chr6:13428571]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 13417125 13443009 enh8962
Brain (SK-N-MC) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Muscle (Myotube) Lung Muscle (A673) Heart
chr6 13428547 13428865 vista50956
VISTA
Transcript factors that have rs142136392[chr6:13428571]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 13427953 13428867 NFIC UCSC Txn Factor no Conserved 108538597
chr6 13427977 13428828 RUNX3 UCSC Txn Factor no Conserved 108538598
chr6 13428381 13428743 SPI1 UCSC Txn Factor no Conserved 108538599
chr6 13428393 13428741 ATF2 UCSC Txn Factor no Conserved 108538600
chr6 13428412 13428875 CTCF UCSC Txn Factor no Conserved 108538601
chr6 13428559 13428576 ESR1 JASPAR yes 70315946
chr6 13428559 13428576 ESR1 JASPAR yes 100029575
chr6 13428569 13428581 PKNOX1 JASPAR yes 70315947
chr6 13428569 13428581 PKNOX2 JASPAR yes 70315948
chr6 13428569 13428581 TGIF1 JASPAR yes 70315949
chr6 13428569 13428581 TGIF2 JASPAR yes 70315950
chr6 13428569 13428581 PKNOX1 JASPAR yes 100029576
chr6 13428569 13428581 PKNOX2 JASPAR yes 100029577
chr6 13428569 13428581 TGIF1 JASPAR yes 100029578
chr6 13428569 13428581 TGIF2 JASPAR yes 100029579
Genes associated with rs142136392[chr6:13428571], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More