EnhancerDB
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  3. vista5665[chr1:235089980-235090270]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5665[chr1:235089980-235090270]
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Tissue distribution of vista5665
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Transcription factor that possibly regulate vista5665[chr1:235089980-235090270]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 235089987 235090001 RORA JASPAR yes 36334024
chr1 235089987 235090001 RORA JASPAR yes 118486147
chr1 235089994 235090011 RARA JASPAR yes 36334025
chr1 235089994 235090011 RXRA JASPAR yes 36334026
chr1 235089994 235090011 RARA JASPAR yes 118486148
chr1 235089994 235090011 RXRA JASPAR yes 118486149
chr1 235089995 235089999 ESR1 TRANSFAC yes 36334027
chr1 235089995 235089999 ESR1 TRANSFAC yes 118486150
chr1 235090048 235090062 PLAG1 JASPAR yes 36334028
chr1 235090048 235090062 PLAG1 JASPAR yes 118486151
chr1 235090049 235090058 HIC2 JASPAR yes 36334029
chr1 235090049 235090058 HIC2 JASPAR yes 118486152
chr1 235090050 235090062 TFAP2A JASPAR yes 36334030
chr1 235090050 235090062 TFAP2B JASPAR yes 36334031
chr1 235090050 235090062 TFAP2C JASPAR yes 36334032
chr1 235090050 235090062 TFAP2A JASPAR yes 118486153
chr1 235090050 235090062 TFAP2B JASPAR yes 118486154
chr1 235090050 235090062 TFAP2C JASPAR yes 118486155
chr1 235090050 235090065 TFAP2A JASPAR yes 36334033
chr1 235090050 235090065 TFAP2A JASPAR yes 118486156
chr1 235090078 235090084 JUN TRANSFAC yes 36334034
chr1 235090078 235090084 JUN TRANSFAC yes 118486157
chr1 235090092 235090097 TFAP2A TRANSFAC yes 36334035
chr1 235090092 235090097 TFAP2A TRANSFAC yes 118486158
chr1 235090092 235090098 MZF1 JASPAR yes 36334036
chr1 235090092 235090098 MZF1 JASPAR yes 118486159
chr1 235090101 235090107 PEA3 TRANSFAC yes 36334037
chr1 235090101 235090107 PEA3 TRANSFAC yes 118486160
chr1 235090101 235090112 FLI1 JASPAR yes 36334038
chr1 235090101 235090112 FLI1 JASPAR yes 118486161
chr1 235090134 235090148 IRF7 JASPAR yes 36334039
chr1 235090134 235090148 IRF7 JASPAR yes 118486162
chr1 235090147 235090151 H4TF2 TRANSFAC yes 36334040
chr1 235090147 235090151 H4TF2 TRANSFAC yes 118486163
chr1 235090147 235090160 ELF1 JASPAR yes 36334041
chr1 235090147 235090160 ELF1 JASPAR yes 118486164
chr1 235090150 235090157 ETS1 TRANSFAC yes 36334042
chr1 235090150 235090157 ETS1 TRANSFAC yes 118486165
chr1 235090150 235090160 GABPA JASPAR yes 36334043
chr1 235090150 235090160 GABPA JASPAR yes 118486166
chr1 235090221 235090234 SMAD2 JASPAR yes 36334044
chr1 235090221 235090234 SMAD2 JASPAR yes 118486167
chr1 235090243 235090247 H4TF2 TRANSFAC yes 36334045
chr1 235090243 235090247 H4TF2 TRANSFAC yes 118486168
chr1 235090243 235090256 HSF2 JASPAR yes 36334046
chr1 235090243 235090256 HSF2 JASPAR yes 118486169
SNP sites on vista5665[chr1:235089980-235090270]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 235090003 rs144788482 A C
RARA RXRA
1048140
chr1 235090053 rs78036096 C T
HIC2 PLAG1 TFAP2A TFAP2B TFAP2C
1048141
chr1 235090057 rs542179469 C T
HIC2 PLAG1 TFAP2A TFAP2B TFAP2C
1048142
chr1 235090227 rs190436383 T C
SMAD2
1048143
Genes possibly regulated by vista5665[chr1:235089980-235090270]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista5665[chr1:235089980-235090270]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results