EnhancerDB
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  3. vista598[chr1:19277155-19277462]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista598[chr1:19277155-19277462]
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Tissue distribution of vista598
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Transcription factor that possibly regulate vista598[chr1:19277155-19277462]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 19277166 19277172 SOX10 JASPAR yes 27165268
chr1 19277166 19277172 SOX10 JASPAR yes 118242724
chr1 19277176 19277191 STAT2 JASPAR yes 27165269
chr1 19277176 19277191 STAT2 JASPAR yes 118242725
chr1 19277191 19277195 LFA1 TRANSFAC yes 27165270
chr1 19277191 19277195 LFA1 TRANSFAC yes 118242726
chr1 19277195 19277207 TFAP2A JASPAR yes 27165271
chr1 19277195 19277207 TFAP2B JASPAR yes 27165272
chr1 19277195 19277207 TFAP2C JASPAR yes 27165273
chr1 19277195 19277207 TFAP2A JASPAR yes 118242727
chr1 19277195 19277207 TFAP2B JASPAR yes 118242728
chr1 19277195 19277207 TFAP2C JASPAR yes 118242729
chr1 19277209 19277226 RARA JASPAR yes 27165274
chr1 19277209 19277226 RARA JASPAR yes 118242730
chr1 19277219 19277224 SP1 TRANSFAC yes 27165275
chr1 19277219 19277224 SP1 TRANSFAC yes 118242731
chr1 19277220 19277240 TP63 JASPAR yes 27165276
chr1 19277220 19277240 TP63 JASPAR yes 118242732
chr1 19277228 19277237 ZEB1 JASPAR yes 27165277
chr1 19277228 19277237 ZEB1 JASPAR yes 118242733
chr1 19277228 19277240 NHLH1 JASPAR yes 27165278
chr1 19277228 19277240 NHLH1 JASPAR yes 118242734
chr1 19277229 19277239 TCF3 JASPAR yes 27165279
chr1 19277229 19277239 TCF4 JASPAR yes 27165280
chr1 19277229 19277239 TCF3 JASPAR yes 118242735
chr1 19277229 19277239 TCF4 JASPAR yes 118242736
chr1 19277230 19277239 SNAI2 JASPAR yes 27165281
chr1 19277230 19277239 SNAI2 JASPAR yes 118242737
chr1 19277231 19277236 USF2 TRANSFAC yes 27165282
chr1 19277231 19277236 USF2 TRANSFAC yes 118242738
chr1 19277232 19277247 TFAP2A JASPAR yes 27165283
chr1 19277232 19277247 TFAP2A JASPAR yes 118242739
chr1 19277244 19277258 GLIS2 JASPAR yes 27165284
chr1 19277244 19277258 ZIC1 JASPAR yes 27165285
chr1 19277244 19277258 GLIS2 JASPAR yes 118242740
chr1 19277244 19277258 ZIC1 JASPAR yes 118242741
chr1 19277244 19277259 ZIC3 JASPAR yes 27165286
chr1 19277244 19277259 ZIC4 JASPAR yes 27165287
chr1 19277244 19277259 ZIC3 JASPAR yes 118242742
chr1 19277244 19277259 ZIC4 JASPAR yes 118242743
chr1 19277245 19277256 EBF1 JASPAR yes 27165288
chr1 19277245 19277256 EBF1 JASPAR yes 118242744
chr1 19277253 19277261 MGA JASPAR yes 27165289
chr1 19277253 19277261 TBX15 JASPAR yes 27165290
chr1 19277253 19277261 TBX1 JASPAR yes 27165291
chr1 19277253 19277261 TBX4 JASPAR yes 27165292
chr1 19277253 19277261 TBX5 JASPAR yes 27165293
chr1 19277253 19277261 MGA JASPAR yes 118242745
chr1 19277253 19277261 TBX15 JASPAR yes 118242746
chr1 19277253 19277261 TBX1 JASPAR yes 118242747
chr1 19277253 19277261 TBX4 JASPAR yes 118242748
chr1 19277253 19277261 TBX5 JASPAR yes 118242749
chr1 19277266 19277276 SP1 JASPAR yes 27165294
chr1 19277266 19277276 SP1 JASPAR yes 118242750
chr1 19277268 19277273 SP1 TRANSFAC yes 27165295
chr1 19277268 19277273 SP1 TRANSFAC yes 118242751
chr1 19277269 19277274 SP1 TRANSFAC yes 27165296
chr1 19277269 19277274 SP1 TRANSFAC yes 118242752
chr1 19277269 19277275 SP1 TRANSFAC yes 27165297
chr1 19277269 19277275 SP1 TRANSFAC yes 118242753
chr1 19277286 19277297 FOSL2 JASPAR yes 27165298
chr1 19277286 19277297 FOSL2 JASPAR yes 118242754
chr1 19277292 19277308 ZNF143 JASPAR yes 27165299
chr1 19277292 19277308 ZNF143 JASPAR yes 118242755
chr1 19277334 19277342 SP1 TRANSFAC yes 27165300
chr1 19277334 19277342 SP1 TRANSFAC yes 118242756
chr1 19277339 19277350 ELK4 JASPAR yes 27165301
chr1 19277339 19277350 FLI1 JASPAR yes 27165302
chr1 19277339 19277350 ELK4 JASPAR yes 118242757
chr1 19277339 19277350 FLI1 JASPAR yes 118242758
chr1 19277339 19277352 ELF3 JASPAR yes 27165303
chr1 19277339 19277352 ELF3 JASPAR yes 118242759
chr1 19277340 19277350 ELK1 JASPAR yes 27165304
chr1 19277340 19277350 GABPA JASPAR yes 27165305
chr1 19277340 19277350 ELK1 JASPAR yes 118242760
chr1 19277340 19277350 GABPA JASPAR yes 118242761
chr1 19277340 19277351 ELF5 JASPAR yes 27165306
chr1 19277340 19277351 ELF5 JASPAR yes 118242762
chr1 19277340 19277352 ELF4 JASPAR yes 27165307
chr1 19277340 19277352 ELF4 JASPAR yes 118242763
chr1 19277342 19277348 ETS1 JASPAR yes 27165308
chr1 19277342 19277348 SPI1 JASPAR yes 27165309
chr1 19277342 19277348 ETS1 JASPAR yes 118242764
chr1 19277342 19277348 SPI1 JASPAR yes 118242765
chr1 19277342 19277352 ELK1 JASPAR yes 27165310
chr1 19277342 19277352 ELK1 JASPAR yes 118242766
chr1 19277353 19277368 MEF2C JASPAR yes 27165311
chr1 19277353 19277368 MEF2C JASPAR yes 118242767
chr1 19277354 19277369 MEF2A JASPAR yes 27165312
chr1 19277354 19277369 MEF2A JASPAR yes 118242768
chr1 19277405 19277411 TBP TRANSFAC yes 27165313
chr1 19277405 19277411 TBP TRANSFAC yes 118242769
chr1 19277449 19277452 MYB TRANSFAC yes 27165314
chr1 19277449 19277452 MYB TRANSFAC yes 118242770
chr1 19277451 19277457 SOX10 JASPAR yes 27165315
chr1 19277451 19277457 SOX10 JASPAR yes 118242771
SNP sites on vista598[chr1:19277155-19277462]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 19277210 rs186387645 G A
RARA
128409
chr1 19277247 rs534148621 C A
EBF1 GLIS2 TFAP2A ZIC1 ZIC3 ZIC4
128410
chr1 19277271 rs56140067 G C
SP1
128411
chr1 19277326 rs28413803 A G no 128412
chr1 19277329 rs115941959 C T no 128413
chr1 19277429 rs28616688 T C no 128414
chr1 19277450 rs147776025 T C
MYB
128415
Genes possibly regulated by vista598[chr1:19277155-19277462]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 19166093 19186176 - TAS1R2 ENSG00000179002.5 19186176 0.94 1.0 252 9021
chr1 19175767 19247615 - RP13-279N23.2 ENSG00000255275.3 19247615 0.98 0.94 253 70460
chr1 19197926 19229275 - ALDH4A1 ENSG00000159423.12 19229275 0.95 0.98 254 52120
chr1 19230775 19283180 - IFFO2 ENSG00000169991.6 19283180 0.83 0.99 255 94282
Expression level of Genes
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miRNAs possibly regulated by vista598[chr1:19277155-19277462]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results