EnhancerDB
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  3. rs534148621[chr1:19277247]
Enhancers that have rs534148621[chr1:19277247]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19277155 19277462 vista598
VISTA
Transcript factors that have rs534148621[chr1:19277247]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19277121 19277485 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802289
chr1 19277232 19277247 TFAP2A JASPAR yes 27165283
chr1 19277232 19277247 TFAP2A JASPAR yes 118242739
chr1 19277244 19277258 GLIS2 JASPAR yes 27165284
chr1 19277244 19277258 ZIC1 JASPAR yes 27165285
chr1 19277244 19277258 GLIS2 JASPAR yes 118242740
chr1 19277244 19277258 ZIC1 JASPAR yes 118242741
chr1 19277244 19277259 ZIC3 JASPAR yes 27165286
chr1 19277244 19277259 ZIC4 JASPAR yes 27165287
chr1 19277244 19277259 ZIC3 JASPAR yes 118242742
chr1 19277244 19277259 ZIC4 JASPAR yes 118242743
chr1 19277245 19277256 EBF1 JASPAR yes 27165288
chr1 19277245 19277256 EBF1 JASPAR yes 118242744
Genes associated with rs534148621[chr1:19277247], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More