EnhancerDB
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  3. rs56140067[chr1:19277271]
Enhancers that have rs56140067[chr1:19277271]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19277155 19277462 vista598
VISTA
Transcript factors that have rs56140067[chr1:19277271]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19277121 19277485 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802289
chr1 19277266 19277276 SP1 JASPAR yes 27165294
chr1 19277266 19277276 SP1 JASPAR yes 118242750
chr1 19277268 19277273 SP1 TRANSFAC yes 27165295
chr1 19277268 19277273 SP1 TRANSFAC yes 118242751
chr1 19277269 19277274 SP1 TRANSFAC yes 27165296
chr1 19277269 19277274 SP1 TRANSFAC yes 118242752
chr1 19277269 19277275 SP1 TRANSFAC yes 27165297
chr1 19277269 19277275 SP1 TRANSFAC yes 118242753
Genes associated with rs56140067[chr1:19277271], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More