EnhancerDB
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  3. vista993[chr1:28496557-28496804]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista993[chr1:28496557-28496804]
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Tissue distribution of vista993
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Transcription factor that possibly regulate vista993[chr1:28496557-28496804]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28496559 28496564 MYB TRANSFAC yes 27749327
chr1 28496559 28496564 MYB TRANSFAC yes 118262377
chr1 28496559 28496571 PBX1 JASPAR yes 27749328
chr1 28496559 28496571 PBX1 JASPAR yes 118262378
chr1 28496571 28496580 SOX9 JASPAR yes 27749329
chr1 28496571 28496580 SOX9 JASPAR yes 118262379
chr1 28496577 28496592 PRDM1 JASPAR yes 27749330
chr1 28496577 28496592 PRDM1 JASPAR yes 118262380
chr1 28496587 28496608 REST JASPAR yes 27749331
chr1 28496587 28496608 REST JASPAR yes 118262381
chr1 28496591 28496603 INSM1 JASPAR yes 27749332
chr1 28496591 28496603 INSM1 JASPAR yes 118262382
chr1 28496607 28496617 RELA JASPAR yes 27749333
chr1 28496607 28496617 REL JASPAR yes 27749334
chr1 28496607 28496617 RELA JASPAR yes 118262383
chr1 28496607 28496617 REL JASPAR yes 118262384
chr1 28496607 28496618 NFKB1 JASPAR yes 27749335
chr1 28496607 28496618 NFKB1 JASPAR yes 118262385
chr1 28496608 28496618 RELA JASPAR yes 27749336
chr1 28496608 28496618 REL JASPAR yes 27749337
chr1 28496608 28496618 RELA JASPAR yes 118262386
chr1 28496608 28496618 REL JASPAR yes 118262387
chr1 28496609 28496619 TEAD4 JASPAR yes 27749338
chr1 28496609 28496619 TEAD4 JASPAR yes 118262388
chr1 28496623 28496639 RFX2 JASPAR yes 27749339
chr1 28496623 28496639 RFX3 JASPAR yes 27749340
chr1 28496623 28496639 RFX5 JASPAR yes 27749341
chr1 28496623 28496639 RFX2 JASPAR yes 118262389
chr1 28496623 28496639 RFX3 JASPAR yes 118262390
chr1 28496623 28496639 RFX5 JASPAR yes 118262391
chr1 28496624 28496635 STAT1 JASPAR yes 27749342
chr1 28496624 28496635 STAT1 JASPAR yes 118262392
chr1 28496629 28496638 SRY JASPAR yes 27749343
chr1 28496629 28496638 SRY JASPAR yes 118262393
chr1 28496631 28496634 MYB TRANSFAC yes 27749344
chr1 28496631 28496634 MYB TRANSFAC yes 118262394
chr1 28496638 28496642 NFE TRANSFAC yes 27749345
chr1 28496638 28496642 NFE TRANSFAC yes 118262395
chr1 28496644 28496657 ATF4 JASPAR yes 27749346
chr1 28496644 28496657 ATF4 JASPAR yes 118262396
chr1 28496647 28496658 NFE2L2 JASPAR yes 27749347
chr1 28496647 28496658 NFE2L2 JASPAR yes 118262397
chr1 28496649 28496653 YY1 TRANSFAC yes 27749348
chr1 28496649 28496653 YY1 TRANSFAC yes 118262398
chr1 28496656 28496669 SCRT2 JASPAR yes 27749349
chr1 28496656 28496669 SCRT2 JASPAR yes 118262399
chr1 28496661 28496672 FOXH1 JASPAR yes 27749350
chr1 28496661 28496672 FOXH1 JASPAR yes 118262400
chr1 28496661 28496682 IRF1 JASPAR yes 27749351
chr1 28496661 28496682 IRF1 JASPAR yes 118262401
chr1 28496665 28496670 H4TF1 TRANSFAC yes 27749352
chr1 28496665 28496670 H4TF1 TRANSFAC yes 118262402
chr1 28496686 28496696 RELA JASPAR yes 27749353
chr1 28496686 28496696 REL JASPAR yes 27749354
chr1 28496686 28496696 RELA JASPAR yes 118262403
chr1 28496686 28496696 REL JASPAR yes 118262404
chr1 28496686 28496697 NFKB1 JASPAR yes 27749355
chr1 28496686 28496697 NFKB1 JASPAR yes 118262405
chr1 28496687 28496697 NFKB1 JASPAR yes 27749356
chr1 28496687 28496697 RELA JASPAR yes 27749357
chr1 28496687 28496697 NFKB1 JASPAR yes 118262406
chr1 28496687 28496697 RELA JASPAR yes 118262407
chr1 28496687 28496698 NFKB1 JASPAR yes 27749358
chr1 28496687 28496698 NFKB1 JASPAR yes 118262408
chr1 28496688 28496698 RELA JASPAR yes 27749359
chr1 28496688 28496698 REL JASPAR yes 27749360
chr1 28496688 28496698 RELA JASPAR yes 118262409
chr1 28496688 28496698 REL JASPAR yes 118262410
chr1 28496691 28496705 EBF1 JASPAR yes 27749361
chr1 28496691 28496705 EBF1 JASPAR yes 118262411
chr1 28496692 28496703 EBF1 JASPAR yes 27749362
chr1 28496692 28496703 EBF1 JASPAR yes 118262412
chr1 28496712 28496726 TLX1 JASPAR yes 27749363
chr1 28496712 28496726 TLX1 JASPAR yes 118262413
chr1 28496722 28496726 H1TF2 TRANSFAC yes 27749364
chr1 28496722 28496726 NFE TRANSFAC yes 27749365
chr1 28496722 28496726 SRF TRANSFAC yes 27749366
chr1 28496722 28496726 H1TF2 TRANSFAC yes 118262414
chr1 28496722 28496726 NFE TRANSFAC yes 118262415
chr1 28496722 28496726 SRF TRANSFAC yes 118262416
chr1 28496738 28496752 GLIS3 JASPAR yes 27749367
chr1 28496738 28496752 GLIS3 JASPAR yes 118262417
chr1 28496747 28496758 FOXA1 JASPAR yes 27749368
chr1 28496747 28496758 FOXA1 JASPAR yes 118262418
chr1 28496747 28496767 TBX19 JASPAR yes 27749369
chr1 28496747 28496767 TBX19 JASPAR yes 118262419
chr1 28496753 28496759 HiNF-A TRANSFAC yes 27749370
chr1 28496753 28496759 HiNF-A TRANSFAC yes 118262420
chr1 28496754 28496764 TFEC JASPAR yes 27749371
chr1 28496754 28496764 TFEC JASPAR yes 118262421
chr1 28496782 28496791 ZEB1 JASPAR yes 27749372
chr1 28496782 28496791 ZEB1 JASPAR yes 118262422
chr1 28496802 28496820 ESR2 JASPAR yes 27749373
chr1 28496802 28496820 ESR2 JASPAR yes 118262423
SNP sites on vista993[chr1:28496557-28496804]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28496622 rs536652083 C A no 190599
chr1 28496628 rs146404085 C T
RFX2 RFX3 RFX5 STAT1
190600
chr1 28496714 rs11802641 G A
TLX1
190601
chr1 28496748 rs78221516 C T
FOXA1 GLIS3 TBX19
190602
Genes possibly regulated by vista993[chr1:28496557-28496804]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28296855 28415207 - EYA3 ENSG00000158161.11 28415207 0.83 0.99 404 18650
chr1 28473677 28520447 - PTAFR ENSG00000169403.7 28520447 0.84 1.0 405 76357
chr1 28525967 28559536 - DNAJC8 ENSG00000126698.6 28559536 0.64 0.99 406 37268
chr1 28527013 28527152 - AL353354.1 ENSG00000215902.1 28527152 0.0 0.0 407 69652
chr1 28527070 28527419 + AL353354.2 ENSG00000269804.1 28527070 0.98 1.0 408 69734
chr1 28562620 28573417 + ATPIF1 ENSG00000130770.13 28562620 0.9 0.99 409 34184
chr1 28586038 28609002 + SESN2 ENSG00000130766.4 28586038 0.78 1.0 410 10766
Expression level of Genes
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miRNAs possibly regulated by vista993[chr1:28496557-28496804]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results