EnhancerDB
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Enhancers that have rs10424230[chr19:3388658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3362205 3392371 enh17862
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Cervix (HeLa-S3) Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs10424230[chr19:3388658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3386265 3389100 TCF7L2 GTRD no Colon (HCT116) 21839142
chr19 3386265 3389100 TCF7L2 GTRD no Colon (HCT116) 108366435
chr19 3387135 3388928 ZNF143 GTRD no Epithelial (MCF-7) 21839143
chr19 3387135 3388928 ZNF143 GTRD no Epithelial (MCF-7) 108366436
chr19 3387460 3389114 TCF7L2 GTRD no Colon (HCT116) 21839151
chr19 3387460 3389114 TCF7L2 GTRD no Colon (HCT116) 108366444
chr19 3387498 3389063 TCF7L2 GTRD no Colon (HCT116) 21839157
chr19 3387498 3389063 TCF7L2 GTRD no Colon (HCT116) 108366450
chr19 3387557 3390833 ZNF274 GTRD no Cervix (HeLa-S3) 21839181
chr19 3387557 3390833 ZNF274 GTRD no Cervix (HeLa-S3) 108366474
chr19 3387722 3388673 ZBTB33 GTRD no Lung (A549) 21839230
chr19 3387722 3388673 ZBTB33 GTRD no Lung (A549) 108366524
chr19 3387825 3388670 ZNF274 GTRD no Blood (GM12878) 21839245
chr19 3387825 3388670 ZNF274 GTRD no Blood (GM12878) 108366541
chr19 3388018 3388783 ZNF274 GTRD no Bone Marrow (K562) 21839254
chr19 3388018 3388783 ZNF274 GTRD no Bone Marrow (K562) 108366550
chr19 3388099 3389424 ZNF274 GTRD no Bone Marrow (K562) 21839256
chr19 3388099 3389424 ZNF274 GTRD no Bone Marrow (K562) 108366552
chr19 3388649 3388659 ZNF740 JASPAR yes 112126937
chr19 3388650 3388660 SP1 JASPAR yes 112126938
chr19 3388650 3388660 ZNF740 JASPAR yes 112126939
chr19 3388650 3388670 RREB1 JASPAR yes 112126940
chr19 3388651 3388661 ZNF740 JASPAR yes 112126941
chr19 3388652 3388662 ZNF740 JASPAR yes 112126942
Genes associated with rs10424230[chr19:3388658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 3610639 3626813 - CACTIN ENSG00000105298.9 3626813 221981 Uterus 0.440718 16814