EnhancerDB
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  3. rs10489275[chr1:172871189]
Enhancers that have rs10489275[chr1:172871189]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs10489275[chr1:172871189]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172870697 172872476 TCF7L2 GTRD no Colon (HCT116) 21350399
chr1 172870724 172871598 TCF7L2 GTRD no Colon (HCT116) 21350400
chr1 172870800 172872370 TCF7L2 GTRD no Colon (HCT116) 21350401
chr1 172870801 172871722 ZNF274 GTRD no Cervix (HeLa-S3) 21350402
chr1 172870856 172871727 TCF7L2 GTRD no Colon (HCT116) 21350403
chr1 172870865 172871838 ZNF274 GTRD no Cervix (HeLa-S3) 21350404
chr1 172870966 172871706 ZNF274 GTRD no Cervix (HeLa-S3) 21350405
chr1 172870987 172871728 TCF7L2 GTRD no Colon (HCT116) 21350406
chr1 172870999 172871719 TCF7L2 GTRD no Colon (HCT116) 21350407
chr1 172871024 172871648 ZBTB33 GTRD no Lung (A549) 21350408
chr1 172871093 172871607 TCF7L2 GTRD no Colon (HCT116) 21350409
chr1 172871167 172871692 ZNF274 GTRD no Cervix (HeLa-S3) 21350410
chr1 172871174 172871189 HNF1A JASPAR yes 33163383
chr1 172871179 172871192 DUXA JASPAR yes 33163385
chr1 172871180 172871191 DUX4 JASPAR yes 33163386
chr1 172871189 172871199 ALX3 JASPAR yes 33163387
chr1 172871189 172871199 LBX2 JASPAR yes 33163388
chr1 172871189 172871199 MIXL1 JASPAR yes 33163389
Genes associated with rs10489275[chr1:172871189], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More