EnhancerDB
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  3. rs10909959[chr1:3451039]
Enhancers that have rs10909959[chr1:3451039]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3448190 3482098 enh11432
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs10909959[chr1:3451039]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3451025 3451040 TFAP2A JASPAR yes 26292861
chr1 3451025 3451040 TFAP2C JASPAR yes 26292862
chr1 3451025 3451044 REST JASPAR yes 26292863
chr1 3451027 3451042 TFAP2A JASPAR yes 26292864
chr1 3451028 3451039 TFAP2A JASPAR yes 26292865
chr1 3451028 3451039 TFAP2B JASPAR yes 26292866
chr1 3451028 3451039 TFAP2C JASPAR yes 26292867
Genes associated with rs10909959[chr1:3451039], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 3406484 3528059 - MEGF6 ENSG00000162591.11 3528059 0 Esophagus 0.00937652 76