EnhancerDB
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  3. rs112398962[chr17:53514867]
Enhancers that have rs112398962[chr17:53514867]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs112398962[chr17:53514867]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53514861 53514879 IRF2 JASPAR yes 54850548
chr17 53514862 53514883 IRF1 JASPAR yes 54850549
chr17 53514864 53514879 PRDM1 JASPAR yes 54850550
chr17 53514864 53514879 STAT2 JASPAR yes 54850551
chr17 53514865 53514879 STAT1 JASPAR yes 54850552
chr17 53514866 53514878 IRF1 JASPAR yes 54850553
chr17 53514866 53514881 IRF9 JASPAR yes 54850554
Genes associated with rs112398962[chr17:53514867], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More