EnhancerDB
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  3. rs11240488[chr1:205448556]
Enhancers that have rs11240488[chr1:205448556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs11240488[chr1:205448556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205447094 205449923 ZNF274 GTRD no Bone Marrow (K562) 107862187
chr1 205447368 205448725 ZNF274 GTRD no Cervix (HeLa-S3) 21371884
chr1 205447430 205451678 ZNF143 GTRD no Epithelial (MCF-7) 21371887
chr1 205447430 205451678 ZNF143 GTRD no Epithelial (MCF-7) 107862188
chr1 205447432 205448664 ZNF143 GTRD no Epithelial (MCF-7) 21371888
chr1 205447477 205448595 TCF7L2 GTRD no Colon (HCT116) 21371891
chr1 205447544 205451629 TCF7L2 GTRD no Colon (HCT116) 21371892
chr1 205447544 205451629 TCF7L2 GTRD no Colon (HCT116) 107862189
chr1 205447570 205451434 ZNF274 GTRD no Bone Marrow (K562) 107862190
chr1 205447713 205451244 ZNF274 GTRD no Liver (HepG2) 107862191
chr1 205447956 205451653 TCF7L2 GTRD no Colon (HCT116) 21371894
chr1 205447956 205451653 TCF7L2 GTRD no Colon (HCT116) 107862192
chr1 205448373 205448989 SOX2 GTRD no Neural Stem Cells (H9) 21371896
chr1 205448383 205451050 ZNF274 GTRD no Bone Marrow (K562) 107862193
chr1 205448406 205448964 SOX2 GTRD no Neural Stem Cells (H9) 21371897
chr1 205448407 205448684 SOX2 GTRD no Neural Stem Cells (H9) 21371898
chr1 205448493 205449428 ZNF143 GTRD no Epithelial (MCF-7) 21371899
chr1 205448523 205450562 ZNF143 GTRD no Epithelial (MCF-7) 21371900
chr1 205448523 205450562 ZNF143 GTRD no Epithelial (MCF-7) 107862194
chr1 205448543 205450817 ZNF274 GTRD no Bone Marrow (K562) 107862195
chr1 205448552 205448564 PBX1 JASPAR yes 34763082
chr1 205448554 205448565 NFE2L2 JASPAR yes 34763083
Genes associated with rs11240488[chr1:205448556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More