EnhancerDB
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  3. rs11339009[chr17:53523590]
Enhancers that have rs11339009[chr17:53523590]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs11339009[chr17:53523590]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53523587 53523602 FOXP1 JASPAR yes 54851890
chr17 53523588 53523603 FOXP1 JASPAR yes 54851891
chr17 53523589 53523604 FOXP1 JASPAR yes 54851892
chr17 53523589 53523610 IRF1 JASPAR yes 54851893
chr17 53523590 53523605 FOXP1 JASPAR yes 54851894
chr17 53523590 53523611 IRF1 JASPAR yes 54851895
Genes associated with rs11339009[chr17:53523590], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More