EnhancerDB
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  3. rs115471001[chr1:52427311]
Enhancers that have rs115471001[chr1:52427311]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52426231 52441515 enh26698
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Large Intestine Liver Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs115471001[chr1:52427311]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52427300 52427315 SCRT1 JASPAR yes 28878599
chr1 52427301 52427311 FIGLA JASPAR yes 28878600
chr1 52427301 52427311 ID4 JASPAR yes 28878601
chr1 52427301 52427311 TCF3 JASPAR yes 28878602
chr1 52427301 52427311 TCF4 JASPAR yes 28878603
chr1 52427302 52427311 SNAI2 JASPAR yes 28878604
chr1 52427311 52427326 SOX21 JASPAR yes 28878606
Genes associated with rs115471001[chr1:52427311], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More