EnhancerDB
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  3. rs115709521[chr17:80260606]
Enhancers that have rs115709521[chr17:80260606]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80234785 80270055 enh4646
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs115709521[chr17:80260606]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80259381 80262776 ZNF143 GTRD no Epithelial (MCF-7) 21799512
chr17 80259492 80260608 ZNF274 GTRD no Bone Marrow (K562) 21799519
chr17 80259509 80260655 TCF7L2 GTRD no Colon (HCT116) 21799521
chr17 80259569 80260617 TCF7L2 GTRD no Colon (HCT116) 21799530
chr17 80259606 80261751 TCF7L2 GTRD no Colon (HCT116) 21799538
chr17 80259702 80260616 ZNF274 GTRD no Cervix (HeLa-S3) 21799546
chr17 80259703 80261688 TCF7L2 GTRD no Colon (HCT116) 21799548
chr17 80259703 80261948 TCF7L2 GTRD no Colon (HCT116) 21799549
chr17 80259790 80260614 ZNF274 GTRD no Cervix (HeLa-S3) 21799568
chr17 80259809 80260622 TCF7L2 GTRD no Colon (HCT116) 21799569
chr17 80259825 80260615 ZBTB33 GTRD no Brain (SK-N-SH) 21799571
chr17 80259852 80262009 TCF7L2 GTRD no Colon (HCT116) 21799576
chr17 80259858 80261559 TCF7L2 GTRD no Colon (HCT116) 21799578
chr17 80259923 80260621 ZNF274 GTRD no Bone Marrow (K562) 21799592
chr17 80259952 80260607 ZNF274 GTRD no Blood (GM12878) 21799599
chr17 80259969 80260610 ZNF274 GTRD no Blood (GM12878) 21799606
chr17 80260037 80260607 TCF7L2 GTRD no Colon (HCT116) 21799632
chr17 80260602 80260615 SMAD2 JASPAR yes 56360499
Genes associated with rs115709521[chr17:80260606], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More