EnhancerDB
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  3. rs11578090[chr1:202038997]
Enhancers that have rs11578090[chr1:202038997]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs11578090[chr1:202038997]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202036767 202039399 ZNF274 GTRD no Cervix (HeLa-S3) 21366411
chr1 202038689 202039505 ZNF143 GTRD no Epithelial (MCF-7) 21366424
chr1 202038836 202039438 ZNF274 GTRD no Bone Marrow (K562) 21366425
chr1 202038846 202039146 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366426
chr1 202038869 202039066 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366427
chr1 202038902 202039034 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366428
chr1 202038984 202039002 ESR2 JASPAR yes 34549308
chr1 202038986 202039001 ESR2 JASPAR yes 34549310
chr1 202038987 202039003 RFX5 JASPAR yes 34549312
chr1 202038990 202039002 YY1 JASPAR yes 34549313
chr1 202038997 202039016 PAX5 JASPAR yes 34549314
Genes associated with rs11578090[chr1:202038997], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 201328136 201346890 - TNNT2 ENSG00000118194.14 201346890 692107 Spleen 0.441324 1704